Difference between revisions of "Documentation/4.0/SlicerApplication/LookupTables"
From Slicer Wiki
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=LUTs= | =LUTs= | ||
| − | <gallery> | + | <gallery widths=200px> |
| − | file:DiscreteLUTs-2012-02-18.png|Discrete | + | file:DiscreteLUTs-2012-02-18.png|''Discrete LUTs'' |
| − | file:Shade-LUTs-2012-02-18.png|Shade | + | file:Shade-LUTs-2012-02-18.png|''Shade LUTs'' |
| − | file:Tint-LUTs-2012-02-18.png|Tint | + | file:Tint-LUTs-2012-02-18.png|''Tint LUTs'' |
| − | file:Freesurfer-LUTs-2012-02-18.png|Freesurfer | + | file:Freesurfer-LUTs-2012-02-18.png|''Freesurfer LUTs''<br> [[Slicer3:Freesurfer_labels|Freesurfer labels]] |
| − | file:PET-LUTs-2012-02-18.png|PET | + | file:PET-LUTs-2012-02-18.png|''PET LUTs'' |
| − | file:CartilageMRI-LUTs-2012-02-18.png|Cartilage MRI | + | file:CartilageMRI-LUTs-2012-02-18.png|''Cartilage MRI LUTs'' |
| − | file:Labelmap-LUTs-2012-02-18.png|Labelmap | + | file:Labelmap-LUTs-2012-02-18.png|''Labelmap LUTs''<br> [[Slicer3:2010_Brain_Labels|2010 Brain Labels]]: Label colors for brain segmentation<br> [[Slicer3:2010_Label_Colors|2010 Label Colors]]: Colors for a generic labelmap |
| − | file:GenericLabel-LUTs-2012-02-18.png|Generic Labelmap | + | file:GenericLabel-LUTs-2012-02-18.png|''Generic Labelmap LUTs''<br> [[Slicer3:2010_GenericAnatomyColors|GenericAnatomyColors]]: default LUT<br> [[Slicer3:GenericColors.txt|GenericColors]] |
</gallery> | </gallery> | ||
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===Custom LUTs=== | ===Custom LUTs=== | ||
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*[[Slicer3:Mori-Atlas_labels|Mori-Atlas labels]] | *[[Slicer3:Mori-Atlas_labels|Mori-Atlas labels]] | ||
*[[Slicer3:Lauras_labels|Lauras labels]] | *[[Slicer3:Lauras_labels|Lauras labels]] | ||
| − | + | *[[CCA:Atlases:MRI_Brain_Atlas_2010:ColorFile|2010 Brain Atlas]]:Good example of the wiki-based labelpage format, including multiple tables. | |
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| − | *[[CCA:Atlases:MRI_Brain_Atlas_2010:ColorFile|2010 Brain Atlas]] | ||
===LUTs for Charting=== | ===LUTs for Charting=== | ||
Revision as of 22:39, 18 February 2012
Home < Documentation < 4.0 < SlicerApplication < LookupTables
Overview
Slicer offers a variety of predefined lookup tables (LUT).
LUTs
Discrete LUTs
Shade LUTs
Tint LUTs
Freesurfer LUTs
Freesurfer labels
PET LUTs
Cartilage MRI LUTs
Labelmap LUTs
2010 Brain Labels: Label colors for brain segmentation
2010 Label Colors: Colors for a generic labelmap
Generic Labelmap LUTs
GenericAnatomyColors: default LUT
GenericColors
Custom LUTs
- Mori-Atlas labels
- Lauras labels
- 2010 Brain Atlas:Good example of the wiki-based labelpage format, including multiple tables.
LUTs for Charting
Please see the separate page
Slicer ColorPicker
Custom LUTs
It is relatively easy to create custom LUTs by creating a table with the colors on the wiki. This allows to select specific names and colors when segmenting. See below for an example.
| integer_label | text_label | color | notes |
|---|---|---|---|
| 0 | background | rgba(0,0,0,0) | |
| 1 | tissue | rgb(128,174,128) | Default label for bodily tissues |
| 2 | bone | rgb(241,214,145) | |
| 3 | skin | rgb(177,122,101) | |
| 4 | connective tissue | rgb(111,184,210) |
- Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
- Go here to create a text file in Slicer LUT format.
- A custom LUT can be loaded into Slicer like any other file.
