Revision as of 17:18, 18 February 2012

Overview

Slicer offers a variety of predefined lookup tables (LUT).

The slicer colorpicker allows to select colors from a label map and to assign them to objects such as surface models or streamlines

Please see the separate page

It is relatively easy to create custom LUTs by creating a table with the colors on the wiki. See the example below.

integer_label	text_label	color	notes
0	background	rgba(0,0,0,0)
1	tissue	rgb(128,174,128)	Default label for bodily tissues
2	bone	rgb(241,214,145)
3	skin	rgb(177,122,101)
4	connective tissue	rgb(111,184,210)

Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
Go here to create a text file in Slicer LUT format.

@@ Line 35: / Line 35: @@
 ! notes
 |-
-| 0
+|0
-| background
+|background
-| rgba(0,0,0,0.0)
+|style="background:rgb(0,0,0);color:white"|rgba(0,0,0,0)
-| The background label is included here because it isn't an anatomical structure.
+|
+|-
+|1
+|tissue
+|style="background:rgb(128,174,128)"|rgb(128,174,128)
+| Default label for bodily tissues
+|-
+|2
+|bone
+|style="background:rgb(241,214,145)"|rgb(241,214,145)
+|
+|-
+|3
+|skin
+|style="background:rgb(177,122,101)"|rgb(177,122,101)
+|
+|-
+|4
+|connective tissue
+|style="background:rgb(111,184,210)"|rgb(111,184,210)
+|
+|-
 |}