Difference between revisions of "Modules:GyriContourSegmentation-Documentation-3.5"
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Publications related to this module go here. Links to pdfs would be useful. | Publications related to this module go here. Links to pdfs would be useful. | ||
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+ | P.A. Karasev, J.G. Malcolm, M. Niethammer, R. Kikinis, A. Tannenbaum. User-Driven 3D Mesh Region Targeting. To appear in SPIE Medical Imaging 2010. [[File:pkmesh-spie.pdf]] |
Revision as of 23:47, 4 December 2009
Home < Modules:GyriContourSegmentation-Documentation-3.5Return to Slicer 3.5 Documentation
Gyri Contour Segmentation
MyModule
General Information
Module Type & Category
Type: CLI
Category: Segmentation
Authors, Collaborators & Contact
- Peter Karasev (Author): Georgia Tech
- Allen Tannenbaum (Collaborator): Georgia Tech
- Ron Kikinis (Collaborator): Harvard Medical School SPL
- Jimi Macolm (Collaborator): Harvard Medical School SPL / Georgia Tech
- Contact: Peter Karasev, pkarasev@gatech.edu
Module Description
This module is a tool to generate closed contours on a surface in 3D. The contour is initialized with a set of points, and subsequently 'evolves' according to some geometric criterion of the underlying surface (e.g. Surface Normal, mean curvature, second fundamental form, etc) and the embedded curve (e.g. geodesic & normal curvatures, etc ).
The implementation uses a version of Sparse Field Level Sets (Whitaker et al 1998) modified for a mesh where there is an arbitrary number of vertex neighbors.
While the motivating problem is segmentation of Sulci & Gyri on the cortical surface, the technique is also applicable to analysis of other anatomic structures (e.g. bones and fractures thereof).
Usage
Examples, Use Cases & Tutorials
- Note use cases for which this module is especially appropriate, and/or link to examples.
- Link to examples of the module's use
- Link to any existing tutorials
Quick Tour of Features and Use
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- Input panel:
- Parameters panel:
- Output panel:
- Viewing panel:
Development
Dependencies
Other modules or packages that are required for this module's use.
Known bugs
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Usability issues
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Source code & documentation
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More Information
Acknowledgment
Include funding and other support here.
References
Publications related to this module go here. Links to pdfs would be useful.
P.A. Karasev, J.G. Malcolm, M. Niethammer, R. Kikinis, A. Tannenbaum. User-Driven 3D Mesh Region Targeting. To appear in SPIE Medical Imaging 2010.