Difference between revisions of "Slicer3: Image Guided Therapy (IGT)"
m (Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2") |
|||
(33 intermediate revisions by 3 users not shown) | |||
Line 2: | Line 2: | ||
The Slicer3 IGT tools are intended to enable research in image guided therapy. They leverage the Slicer environment and augment it with a number of IGT specific functionalities and modules. One key element of this capability is Open IGT link, a communication protocol to link 3D Slicer to a variety of devices. | The Slicer3 IGT tools are intended to enable research in image guided therapy. They leverage the Slicer environment and augment it with a number of IGT specific functionalities and modules. One key element of this capability is Open IGT link, a communication protocol to link 3D Slicer to a variety of devices. | ||
+ | |||
+ | <br> | ||
+ | |||
+ | =Getting Started With Navigation:= | ||
+ | *http://www.na-mic.org/Wiki/index.php/IGT:ToolKit | ||
=Use-case scenario 1: Neurosurgical navigation= | =Use-case scenario 1: Neurosurgical navigation= | ||
*I am a neurosurgeon who is using the BrainLabs Navigation system. I would like to use Slicer to do some research in DTI visualization during procedures. What do I do? | *I am a neurosurgeon who is using the BrainLabs Navigation system. I would like to use Slicer to do some research in DTI visualization during procedures. What do I do? | ||
− | + | **[[Slicer3:BrainLab_Integration|The integration of BrainLab, BioImage Suite and Slicer3]] | |
− | [ | + | <br> |
− | =Use-case scenario 2= | + | =Use-case scenario 2: IGT robotics tutorial with LEGO Mindstorms= |
*I am a professor who wants to use Slicer to educate my students about the basics of robotics in IGT | *I am a professor who wants to use Slicer to educate my students about the basics of robotics in IGT | ||
− | *Danielle Pace will list here the steps needed to do this and will provide links to the current pages with in-depth documentation | + | <!--*Danielle Pace will list here the steps needed to do this and will provide links to the current pages with in-depth documentation--> |
+ | |||
+ | ==Overview== | ||
+ | This tutorial provides a thorough understanding of the main concepts in image-guided therapy and medical robotics, namely imaging, pre-operative planning, targeting by tracking, navigation and registration. The tutorial is open-source and completely free for anyone to use or modify (see http://www.slicer.org for details and for the BSD style open source license). | ||
+ | |||
+ | The tutorial is: | ||
+ | * Hands-on: Using a LEGO robot, a LEGO phantom (anatomical model) and a tutorial module in 3D Slicer v. 3 means that tutorial participants can use real physical equipment and software to learn about IGT and medical robotics. | ||
+ | |||
+ | * Accessible: The tutorial software is open-source, and the cost of the materials is approximately $300 USD + shipping and taxes. | ||
+ | |||
+ | ==Materials== | ||
+ | *Provided by NA-MIC and the Surgical Planning Lab: | ||
+ | ** 3D Slicer (download from [http://www.slicer.org/pages/Downloads Download page]) | ||
+ | ** 3D Slicer LEGO tutorial module (available at [http://www.na-mic.org/ViewVC/index.cgi/trunk/LegoTutorial/?root=NAMICSandBox NA-MIC SandBox Subversion Repositiory]) | ||
+ | ** CT volume of the phantom (download [http://wiki.na-mic.org/Wiki/images/6/69/000003.SER.zip 000003.SER.zip]) | ||
+ | |||
+ | *Provided by tutorial participants: | ||
+ | ** 1 LEGO Mindstorms NXT kit (Available at [http://shop.lego.com/ByTheme/Product.aspx?p=8527&cn=17&d=70 LEGO Shop]) | ||
+ | ** 1 LEGO Deluxe Brick box (Available at [http://shop.lego.com/ByTheme/Product.aspx?p=6167&cn=306&d=362 LEGO Shop]) | ||
+ | ** 2 pom-poms | ||
+ | ** Linux computer with root access or Windows with administrator privileges | ||
+ | (For purchasing information for user-supplied materials, see the "Tutorial Slides Part 1 - Background and Materials" slides.) | ||
+ | |||
+ | ==Steps== | ||
+ | |||
+ | '''STEP 1:''' Assemble Robot (See [http://wiki.na-mic.org/Wiki/images/8/81/LEGOIGTAndMedicalRoboticsTutorial_RobotAssemblyInstructions.pdf Robot assembly instruction]) | ||
+ | |||
+ | '''STEP 2:''' Assemble Phantom (See [http://wiki.na-mic.org/Wiki/images/0/0d/LEGOIGTAndMedicalRoboticsTutorial_PhantomAssemblyInstructions.pdf Phantom assembly instruction]) | ||
+ | |||
+ | '''STEP 3:''' Place phantom (See [http://wiki.na-mic.org/Wiki/images/6/64/LEGOIGTAndMedicalRoboticsTutorial_PhantomPlacementGuide.pdf Phantom assembly instruction]) | ||
+ | |||
+ | For more information, please refer the tutorial slide materials listed bellow. | ||
+ | |||
+ | ==Tutorial slides and references== | ||
+ | * Tutorial Slides Part 1 - Background and Materials: [http://wiki.na-mic.org/Wiki/images/d/d1/LEGOIGTAndMedicalRoboticsTutorial_1_BackgroundAndMaterials.pdf LEGOIGTAndMedicalRoboticsTutorial_1_BackgroundAndMaterials.pdf] | ||
+ | |||
+ | * Tutorial Slides Part 2 - Basic Tutorial: [http://wiki.na-mic.org/Wiki/images/a/ab/LEGOIGTAndMedicalRoboticsTutorial_2_BasicTutorial.pdf LEGOIGTAndMedicalRoboticsTutorial_2_BasicTutorial.pdf] | ||
+ | |||
+ | * Tutorial Slides Part 3 - Advanced Tutorial: [http://wiki.na-mic.org/Wiki/images/f/f4/LEGOIGTAndMedicalRoboticsTutorial_3_AdvancedTutorial.pdf LEGOIGTAndMedicalRoboticsTutorial_3_AdvancedTutorial.pdf] | ||
+ | |||
+ | * MICCAI 2007 "Open Source and Open Data for MICCAI" workshop paper: [http://wiki.na-mic.org/Wiki/index.php/Media:AnAccessibleHandsOnTutorialSystemForIGTAndMedicalRobotics.pdf AnAccessibleHandsOnTutorialSystemForIGTAndMedicalRobotics.pdf] | ||
+ | |||
+ | |||
+ | <br> | ||
= List of devices that have been linked successfully = | = List of devices that have been linked successfully = | ||
Line 23: | Line 71: | ||
* IGT Modules in Slicer 3.3 | * IGT Modules in Slicer 3.3 | ||
Only what is in Slicer 3.3 nightly! | Only what is in Slicer 3.3 nightly! | ||
− | |||
− | |||
− | |||
− |
Latest revision as of 02:37, 27 November 2019
Home < Slicer3: Image Guided Therapy (IGT)Contents
Introduction
The Slicer3 IGT tools are intended to enable research in image guided therapy. They leverage the Slicer environment and augment it with a number of IGT specific functionalities and modules. One key element of this capability is Open IGT link, a communication protocol to link 3D Slicer to a variety of devices.
- I am a neurosurgeon who is using the BrainLabs Navigation system. I would like to use Slicer to do some research in DTI visualization during procedures. What do I do?
Use-case scenario 2: IGT robotics tutorial with LEGO Mindstorms
- I am a professor who wants to use Slicer to educate my students about the basics of robotics in IGT
Overview
This tutorial provides a thorough understanding of the main concepts in image-guided therapy and medical robotics, namely imaging, pre-operative planning, targeting by tracking, navigation and registration. The tutorial is open-source and completely free for anyone to use or modify (see http://www.slicer.org for details and for the BSD style open source license).
The tutorial is:
- Hands-on: Using a LEGO robot, a LEGO phantom (anatomical model) and a tutorial module in 3D Slicer v. 3 means that tutorial participants can use real physical equipment and software to learn about IGT and medical robotics.
- Accessible: The tutorial software is open-source, and the cost of the materials is approximately $300 USD + shipping and taxes.
Materials
- Provided by NA-MIC and the Surgical Planning Lab:
- 3D Slicer (download from Download page)
- 3D Slicer LEGO tutorial module (available at NA-MIC SandBox Subversion Repositiory)
- CT volume of the phantom (download 000003.SER.zip)
- Provided by tutorial participants:
(For purchasing information for user-supplied materials, see the "Tutorial Slides Part 1 - Background and Materials" slides.)
Steps
STEP 1: Assemble Robot (See Robot assembly instruction)
STEP 2: Assemble Phantom (See Phantom assembly instruction)
STEP 3: Place phantom (See Phantom assembly instruction)
For more information, please refer the tutorial slide materials listed bellow.
Tutorial slides and references
- Tutorial Slides Part 1 - Background and Materials: LEGOIGTAndMedicalRoboticsTutorial_1_BackgroundAndMaterials.pdf
- Tutorial Slides Part 2 - Basic Tutorial: LEGOIGTAndMedicalRoboticsTutorial_2_BasicTutorial.pdf
- Tutorial Slides Part 3 - Advanced Tutorial: LEGOIGTAndMedicalRoboticsTutorial_3_AdvancedTutorial.pdf
- MICCAI 2007 "Open Source and Open Data for MICCAI" workshop paper: AnAccessibleHandsOnTutorialSystemForIGTAndMedicalRobotics.pdf
List of devices that have been linked successfully
- Support medical tracking systems
- All devices interfaced to IGSTK (Noby inserts link), including
- Flashpoint (Image Guided Technologies, Boulder, CO)
- Robin Medical
- scanners (Noby: which ones)
- robots (Noby which ones)
- IGT Modules in Slicer 3.3
Only what is in Slicer 3.3 nightly!