Difference between revisions of "Documentation/4.0/SlicerApplication/SupportedDataFormat"
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− | + | <noinclude>{{documentation/versioncheck}}</noinclude> | |
− | + | <!-- ---------------------------- --> | |
− | =Volumes= | + | {{documentation/{{documentation/version}}/slicerapplication-header}} |
− | + | <!-- ---------------------------- --> | |
− | + | =File formats supported by Slicer {{documentation/version}}= | |
− | + | {| style="margin: 1em auto 1em auto; border: 1px solid darkgray;" | |
− | + | |- | |
− | + | !Format | |
− | + | !Extensions | |
− | + | !Read | |
− | + | !Write | |
− | + | !Module | |
− | + | |- | |
− | + | ! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Scenes | |
− | + | ! scope="col"| [[Documentation/{{documentation/version}}/Modules/Data|Data]] | |
− | + | |- | |
− | + | | MRML | |
− | + | | .mrml | |
− | + | |bgcolor="LightGreen" align="center"|yes | |
− | + | |bgcolor="LightGreen" align="center"|yes | |
− | + | |[[Documentation/{{documentation/version}}/Developers/MRML|Data Model]] | |
− | + | |- | |
− | + | ! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Raster Images<br><small>''this includes 2D and 3D images, and more complicated types such as DWI or DTI''</small> | |
− | + | ! scope="col"| [[Documentation/{{documentation/version}}/Modules/Volumes|Volumes]] | |
− | =Models= | + | |- |
− | + | | [http://medical.nema.org/ DICOM] | |
− | + | | .dcm ... | |
− | + | |bgcolor="LightGreen" align="center"|yes | |
− | + | |bgcolor="#f34a33" align="center"|no<ref>Limited support for writing image volumes in DICOM format is provided by the [[Documentation/4.0/Modules/ImageReadDicomWrite|Create DICOM Series]] module</ref> | |
− | + | |[[Documentation/{{documentation/version}}/Modules/DICOM|DICOM]] | |
− | =Fiducials= | + | |- |
− | + | | [http://teem.sourceforge.net/nrrd/format.html NRRD] | |
− | + | | .nrrd, .nhdr | |
− | =Transforms= | + | |bgcolor="LightGreen" align="center"|yes |
− | + | |bgcolor="LightGreen" align="center"|yes | |
− | + | | | |
− | + | |- | |
+ | | [http://www.itk.org/Wiki/MetaIO/Documentation MetaImage] | ||
+ | | .mhd, .mha | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | [http://www.vtk.org/VTK/img/file-formats.pdf VTK] | ||
+ | | .vtk | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | [http://www.grahamwideman.com/gw/brain/analyze/formatdoc.htm Analyze] | ||
+ | | .hdr, .img, .img.gz | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | [http://nifti.nimh.nih.gov/nifti-1/ NifTI] | ||
+ | | .nia, .nii, .nii.gz | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | BMP | ||
+ | | .bmp | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | BioRad | ||
+ | | .pic | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | Brains2 | ||
+ | | .mask | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | GIPL | ||
+ | | .gipl .gipl.gz | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | JPEG | ||
+ | | .jpg, .jpeg | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | LSM | ||
+ | | .lsm | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | PNG | ||
+ | | .png | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | Stimulate | ||
+ | | .spr | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | TIFF | ||
+ | | .tif, .tiff | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | MGH-NMR | ||
+ | | .mgz | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | ! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Models | ||
+ | ! scope="col"| [[Documentation/{{documentation/version}}/Modules/Models|Models]] | ||
+ | |- | ||
+ | | [http://www.vtk.org/VTK/img/file-formats.pdf VTK Polygonal Data] | ||
+ | | .vtk | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | [http://www.vtk.org/VTK/img/file-formats.pdf VTK XML Polygonal Data] | ||
+ | | .vtp | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | STL | ||
+ | | .stl | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | OBJ | ||
+ | | .obj | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="#f34a33" align="center"|no | ||
+ | | | ||
+ | |- | ||
+ | | Others (to be tested) | ||
+ | | .g, .byu, .orig, .inflated, .sphere, .white, .smoothwm, .pial | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="#f34a33" align="center"|no | ||
+ | | | ||
+ | |- | ||
+ | ! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Fiducials | ||
+ | ! scope="col"| [[Documentation/{{documentation/version}}/Modules/Annotations|Annotations]] | ||
+ | |- | ||
+ | | CSV | ||
+ | | .fcsv | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | Text | ||
+ | | .txt | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | ! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Transforms | ||
+ | ! scope="col"| [[Documentation/{{documentation/version}}/Modules/Transforms|Transforms]] | ||
+ | |- | ||
+ | | [http://www.itk.org/ItkSoftwareGuide.pdf Transform] | ||
+ | | .tfm, .mat | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | Text | ||
+ | | .txt | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | ! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Transfer Functions | ||
+ | ! scope="col"| [[Documentation/{{documentation/version}}/Modules/VolumeRendering|Volume Rendering]] | ||
+ | |- | ||
+ | | Volume Rendering properties | ||
+ | | .vp | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | | Text | ||
+ | | .txt | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |- | ||
+ | ! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Lookup tables | ||
+ | ! scope="col"| [[Documentation/{{documentation/version}}/Modules/Colors|Colors]] | ||
+ | |- | ||
+ | | [[Documentation/{{documentation/version}}/Modules/Colors#File_format|Text]] | ||
+ | | .txt, .ctbl | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | |bgcolor="LightGreen" align="center"|yes | ||
+ | | | ||
+ | |} | ||
+ | <references/> | ||
=References= | =References= | ||
* [http://www.vtk.org/Wiki/ITK_File_Formats ITK File Formats] | * [http://www.vtk.org/Wiki/ITK_File_Formats ITK File Formats] | ||
+ | |||
+ | <!-- ---------------------------- --> | ||
+ | {{documentation/{{documentation/version}}/slicerapplication-footer}} | ||
+ | <!-- ---------------------------- --> |
Latest revision as of 07:36, 14 June 2013
Home < Documentation < 4.0 < SlicerApplication < SupportedDataFormat
For the latest Slicer documentation, visit the read-the-docs. |
File formats supported by Slicer 4.0
Format | Extensions | Read | Write | Module |
---|---|---|---|---|
Scenes | Data | |||
MRML | .mrml | yes | yes | Data Model |
Raster Images this includes 2D and 3D images, and more complicated types such as DWI or DTI |
Volumes | |||
DICOM | .dcm ... | yes | no[1] | DICOM |
NRRD | .nrrd, .nhdr | yes | yes | |
MetaImage | .mhd, .mha | yes | yes | |
VTK | .vtk | yes | yes | |
Analyze | .hdr, .img, .img.gz | yes | yes | |
NifTI | .nia, .nii, .nii.gz | yes | yes | |
BMP | .bmp | yes | yes | |
BioRad | .pic | yes | yes | |
Brains2 | .mask | yes | yes | |
GIPL | .gipl .gipl.gz | yes | yes | |
JPEG | .jpg, .jpeg | yes | yes | |
LSM | .lsm | yes | yes | |
PNG | .png | yes | yes | |
Stimulate | .spr | yes | yes | |
TIFF | .tif, .tiff | yes | yes | |
MGH-NMR | .mgz | yes | yes | |
Models | Models | |||
VTK Polygonal Data | .vtk | yes | yes | |
VTK XML Polygonal Data | .vtp | yes | yes | |
STL | .stl | yes | yes | |
OBJ | .obj | yes | no | |
Others (to be tested) | .g, .byu, .orig, .inflated, .sphere, .white, .smoothwm, .pial | yes | no | |
Fiducials | Annotations | |||
CSV | .fcsv | yes | yes | |
Text | .txt | yes | yes | |
Transforms | Transforms | |||
Transform | .tfm, .mat | yes | yes | |
Text | .txt | yes | yes | |
Transfer Functions | Volume Rendering | |||
Volume Rendering properties | .vp | yes | yes | |
Text | .txt | yes | yes | |
Lookup tables | Colors | |||
Text | .txt, .ctbl | yes | yes |
- ↑ Limited support for writing image volumes in DICOM format is provided by the Create DICOM Series module