Difference between revisions of "Documentation/4.2/Extensions/SlicerRT"

From Slicer Wiki
Jump to: navigation, search
(Updated according to nightly)
Line 5: Line 5:
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
 
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
−
Authors: Csaba Pinter (PerkLab, Queen's University), Andras Lasso (PerkLab, Queen's University), Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)<br>
+
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
−
Contact: Andras Lasso, <email>lasso@cs.queensu.ca</email><br>
+
{{documentation/{{documentation/version}}/module-introduction-row}}
−
Website: https://www.assembla.com/spaces/slicerrt<br>
+
This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br>
−
License: [http://www.slicer.org/pages/LicenseText Slicer license]
+
Author: Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)<br>
 +
Contact: Kevin Wang, <email>kevin.wang@rmp.uhn.on.ca</email><br>
 +
{{documentation/{{documentation/version}}/module-introduction-row}}
 +
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
 +
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}
 +
|{{collaborator|logo|sparkit}}|{{collaborator|longname|sparkit}}
 +
}}
 +
{{documentation/{{documentation/version}}/module-introduction-end}}
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
−
{{documentation/{{documentation/version}}/extension-section|Extension Description}}
+
{{documentation/{{documentation/version}}/module-section|Module Description}}
−
SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform.
+
The {{documentation/modulename}} module creates isosurfaces from an input dose volume and a series of defined isodose levels. The output is a series of surface models grouped under a hierarchy node parent that can be visualized either in the 3D viewer or overlaid on image slices.
−
SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.
 
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
−
{{documentation/{{documentation/version}}/extension-section|Modules}}
+
{{documentation/{{documentation/version}}/module-section|Use Cases}}
 +
N/A
  
−
*[[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]
+
{|align="center"
−
*[[Documentation/{{documentation/version}}/Modules/Contours|Contours]]
+
|[[File:SlicerRT0.4 Screenshot Isodose.png|thumb|800px| Contours module GUI]]
−
*[[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
+
|}
−
*[[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]
 
−
*[[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]
 
−
*[[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]
 
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
−
{{documentation/{{documentation/version}}/extension-section|Plastimatch}}
+
{{documentation/{{documentation/version}}/module-section|Tutorials}}
 +
N/A
  
−
Plastimatch is an open source software with focus is high-performance volumetric registration of medical images.  Plastimatch extensions are delivered together with SlicerRt.
+
<!-- ---------------------------- -->
−
 
+
{{documentation/{{documentation/version}}/module-section|Panels and their use}}
−
*[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Deformable image registration]]
+
* Input
−
*[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]]
+
** Dose volume
−
*[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] [[image:UnderConstruction.png|tumb|10px]]
+
** Number of Iso levels
−
*[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Landmark-based deformable image registration]]
+
** Iso levels table: color, label and opacity can be set to the isodose surfaces individually
−
*[[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Image warping]] [[image:UnderConstruction.png|tumb|10px]]
+
** Apply: Create isodose surfaces
 +
* Display options
 +
** Show isodose lines: Show/hide isodose lines in 2D slice viewers
 +
** Show isodose surfaces: Show/hide isodose surfaces in the 3D view
 
<!--
 
<!--
−
**[[Documentation/{{documentation/version}}/Modules/PlmDoseComparison|Plastimatch Dose Comparison]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
+
{{documentation/{{documentation/version}}/module-parametersdescription}}
−
**[[Documentation/{{documentation/version}}/Modules/PlmDoseVolumeHistogram|Plastimatch Dose Volume Histogram]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
−
**[[Documentation/{{documentation/version}}/Modules/PlmSyntheticImageGeneration|Plastimatch Synthetic Image Generation]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
−
**[[Documentation/{{documentation/version}}/Modules/PlmThreshBox|Plastimatch Threshold in a box]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
 
-->
 
-->
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
−
{{documentation/{{documentation/version}}/extension-section|Use Cases}}
+
{{documentation/{{documentation/version}}/module-section|Similar Modules}}
−
* Comparison of dose maps and dose volume histograms from various treatment planning systems
+
N/A
−
* Evaluation the effect of image-based non-rigid patient motion compensation
 
−
* Dose accumulation with motion compensation
 
−
 
 
−
{|align="center"
 
−
|[[image:SlicerRtDvh.png|thumb|450px| Dose volume histogram computation using SlicerRT]]
 
−
|}
 
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
−
{{documentation/{{documentation/version}}/extension-section|Tutorials}}
+
{{documentation/{{documentation/version}}/module-section|References}}
−
* Tutorial presentation: [https://www.assembla.com/spaces/slicerrt/documents/aAuMq81Eqr4ztvacwqjQXA/download/aAuMq81Eqr4ztvacwqjQXA available on the SlicerRT website]
+
N/A
−
* Sample data: [https://www.assembla.com/spaces/slicerrt/documents/bMuwgYTKur4yP-acwqjQWU/download/bMuwgYTKur4yP-acwqjQWU available on the SlicerRT website]
 
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
−
{{documentation/{{documentation/version}}/extension-section|References}}
+
{{documentation/{{documentation/version}}/module-section|Information for Developers}}
−
* [https://www.assembla.com/spaces/slicerrt/wiki/SlicerRt_users_guide SlicerRT users guide pages]
+
{{documentation/{{documentation/version}}/module-developerinfo}}
−
* [https://plastimatch.org/contents.html Plastimatch documentation]
 
  
−
<!-- ---------------------------- -->
 
−
{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
 
−
{{documentation/{{documentation/version}}/extension-developerinfo}}
 
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
−
{{documentation/{{documentation/version}}/extension-footer}}
+
{{documentation/{{documentation/version}}/module-footer}}
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->

Revision as of 21:50, 8 November 2012

Home < Documentation < 4.2 < Extensions < SlicerRT


Introduction and Acknowledgements

This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.
Author: Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)
Contact: Kevin Wang, <email>kevin.wang@rmp.uhn.on.ca</email>

Cancer Care Ontario  
Software Platform and Adaptive Radiotherapy Kit  

Module Description

The SlicerRT module creates isosurfaces from an input dose volume and a series of defined isodose levels. The output is a series of surface models grouped under a hierarchy node parent that can be visualized either in the 3D viewer or overlaid on image slices.

Use Cases

N/A

Contours module GUI

Tutorials

N/A

Panels and their use

  • Input
    • Dose volume
    • Number of Iso levels
    • Iso levels table: color, label and opacity can be set to the isodose surfaces individually
    • Apply: Create isodose surfaces
  • Display options
    • Show isodose lines: Show/hide isodose lines in 2D slice viewers
    • Show isodose surfaces: Show/hide isodose surfaces in the 3D view

Similar Modules

N/A

References

N/A

Information for Developers

Work in progress
 Section under construction.


Retrieved from "https://www.slicer.org/w/index.php?title=Documentation/4.2/Extensions/SlicerRT&oldid=29113"