Difference between revisions of "Slicer3:Mori-Atlas labels"

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*Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
 
*Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
−
* [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format.
+
* [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format. '''WARNING''': the conversion fails on the alpha channel if using rgba(R, G, B, 255) instead of rgb(R, G, B) or rgba(R, G, B, 1.0). If the last column of the generated text file contains 65025, change it to 255.
−
 
+
* [[Slicer3:Mori-Atlas_labels_JHU-MNI_SS_Type-I]]
 +
* [[Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-II]]
 +
* [[Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-III]]
 
*List
 
*List
  
−
== 2010 Brain LUT for Slicer general applications ==
+
=Look-up Table for the Mori WM Atlas labels=
−
 
+
Work in progress.
 
{| class="wikitable sortable labelpage labelpagetable" border="1"
 
{| class="wikitable sortable labelpage labelpagetable" border="1"
 
! integer_label
 
! integer_label
 
! text_label
 
! text_label
 
! color
 
! color
−
! notes
 
 
|-
 
|-
 
| 0
 
| 0
 
| Background
 
| Background
 
|style="color:white; background:black"| rgba(0,0,0,0)
 
|style="color:white; background:black"| rgba(0,0,0,0)
−
| black
 
 
|-
 
|-
 
| 1
 
| 1
−
| Bone
+
| MCP_Middle_cerebellar_peduncle
−
|style="background:honeydew"| rgb(240,255,240)
+
| style="background:gold"| gold
−
| honeydew
 
 
|-
 
|-
 
| 2
 
| 2
−
| Skin
+
| PCT_Pontine_crossing_tract_(a_part_of_MCP) genotype
−
|style="background:darksalmon"| rgb(233, 150, 122)
+
| style="background:navajowhite"| navajowhite
−
| darksalmon
 
 
|-
 
|-
 
| 3  
 
| 3  
−
| Muscles
+
| GCC_Genu_of_corpus_callosum
−
|style="background:indianred"| rgb(205,92,92)
+
| style="background:plum"| plum
−
| indianred
 
 
|-
 
|-
 
| 4  
 
| 4  
−
| Fat
+
| BCC_Body_of_corpus_callosum
−
|style="background:palegoldenrod"| rgb(238,232,170)
+
| style="background:pink"| pink
−
| palegoldenrod
 
 
|-
 
|-
 
| 5  
 
| 5  
−
| CSF
+
| SCC_Splenium_of_corpus_callosum
−
|style="background:deepskyblue"| rgb(0,191,255)
+
| style="background:deeppink"| deeppink
−
| deepskyblue
 
 
|-
 
|-
−
| 6  
+
|6  
−
| Ventricles
+
| FX_Fornix_(column_and_body_of_fornix)
−
|style="background:royalblue"| rgb(65,105,225)
+
| style="background:peru"| peru
−
| royalblue
 
 
|-
 
|-
−
| 7  
+
|7  
−
| Arteries
+
| CST-R_Corticospinal_tract_right
−
|style="background:salmon"| rgb(250,128,114)
+
| style="background:tan"| tan
−
| salmon
 
 
|-
 
|-
 
| 8  
 
| 8  
−
| Veins
+
| CST-L_Corticospinal_tract_left
−
| style="background:steelblue"| rgb(70,130,180)
+
| style="background:tan"| tan
−
| steelblue
 
 
|-
 
|-
 
| 9  
 
| 9  
−
| Gray matter
+
| ML-R_Medial_lemniscus_right
−
|style="background:lightgrey"| rgb(211,211,211)
+
| style="background:mediumspringgreen"| mediumspringgreen
−
| lightgrey
 
 
|-
 
|-
 
| 10  
 
| 10  
−
| White matter
+
| ML-L_Medial_lemniscus_left
−
|style="background:ivory"| rgb(255,255,240)
+
| style="background:mediumspringgreen"| mediumspringgreen
−
| ivory
 
 
|-
 
|-
 
| 11  
 
| 11  
−
| Tumor
+
| ICP-R_Inferior_cerebellar_peduncle_right
−
|style="background:lightgreen"| rgb(144,238,144)
+
| style="background:palegreen"| palegreen
−
| lightgreen
 
 
|-
 
|-
 
| 12  
 
| 12  
−
| Edema
+
| ICP-L_Inferior_cerebellar_peduncle_left
−
|style="background:lightcyan"| rgb(224,255,255)
+
| style="background:palegreen"| palegreen
−
| lightcyan
 
 
|-
 
|-
 
| 13  
 
| 13  
−
| Necrosis
+
| SCP-R_Superior_cerebellar_peduncle_right
−
|style="background:thistle"| rgb(216,191,216)
+
| style="background:bisque"| bisque
−
| thistle
 
 
|-
 
|-
 
| 14  
 
| 14  
−
| Structure 1
+
| SCP-L_Superior_cerebellar_peduncle_left
−
|style="background:violet"| rgb(238,130,238)
+
| style="background:bisque"| bisque
−
| violet
 
 
|-
 
|-
 
| 15  
 
| 15  
−
| Structure 2
+
| CP-R_Cerebral_peduncle_right
−
| style="background:gold"| rgb(255,215,0)
+
| style="background:khaki"| khaki
−
| gold
+
|-
−
|}
+
| 16
−
 
+
| CP-L_Cerebral_peduncle_left
−
 
+
| style="background:khaki"| khaki
−
=Mori WM Atlas=
+
|-
−
Work in progress.
+
| 17
−
{| class="wikitable sortable labelpage labelpagetable" border="1"
+
| ALIC-R_Anterior_limb_of_internal_capsule_right
−
! integer_label
+
| style="background:lightskyblue"| lightskyblue
−
! text_label
+
|-
−
! color
+
| 18
 +
| ALIC-L_Anterior_limb_of_internal_capsule_left
 +
| style="background:lightskyblue"| lightskyblue
 +
|-
 +
| 19
 +
| PLIC-R_Posterior_limb_of_internal_capsule_right
 +
| style="background:dodgerblue"| dodgerblue
 +
|-
 +
| 20
 +
| PLIC-L_Posterior_limb_of_internal_capsule_left
 +
| style="background:dodgerblue"| dodgerblue
 +
|-
 +
| 21
 +
| RLIC-R_Retrolenticular_part_of_internal_capsule_right
 +
| style="background:deepskyblue"| deepskyblue
 +
|-
 +
| 22
 +
| RLIC-L_Retrolenticular_part_of_internal_capsule_left
 +
| style="background:deepskyblue"| deepskyblue
 +
|-
 +
| 23
 +
| ACR-R_Anterior_corona_radiata_right
 +
| style="background:powderblue"| powderblue
 +
|-
 +
| 24
 +
| ACR-L_Anterior_corona_radiata_left
 +
| style="background:powderblue"| powderblue
 +
|-
 +
| 25
 +
| SCR-R_Superior_corona_radiata_right
 +
| style="background:blue"| blue
 +
|-
 +
| 26
 +
| SCR-L_Superior_corona_radiata_left
 +
| style="background:blue"| blue
 +
|-
 +
| 27
 +
| PCR-R_Posterior_corona_radiata_right
 +
| style="background:skyblue"| skyblue
 +
|-
 +
| 28
 +
| PCR-L_Posterior_corona_radiata_left
 +
| style="background:skyblue"| skyblue
 +
|-
 +
| 29
 +
| PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right
 +
| style="background:sandybrown"| sandybrown
 +
|-
 +
| 30
 +
| PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left
 +
| style="background:sandybrown"| sandybrown
 +
|-
 +
| 31
 +
| SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right
 +
| style="background:peachpuff"| peachpuff
 +
|-
 +
| 32
 +
| SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left
 +
| style="background:peachpuff"| peachpuff
 +
|-
 +
| 33
 +
| EC-R_External_capsule_right
 +
| style="background:darksalmon"| darksalmon
 +
|-
 +
| 34
 +
| EC-L_External_capsule_left
 +
| style="background:darksalmon"| darksalmon
 +
|-
 +
| 35
 +
| CGC-R_Cingulum_(cingulate_gyrus)_right
 +
| style="background:mediumseagreen"| mediumseagreen
 +
|-
 +
| 36
 +
| CGC-L_Cingulum_(cingulate_gyrus)_left
 +
| style="background:mediumseagreen"| mediumseagreen
 +
|-
 +
| 37
 +
| CGH-R_Cingulum_(hippocampus)_right
 +
| style="background:darkkhaki"| darkkhaki
 +
|-
 +
| 38
 +
| CGH-L_Cingulum_(hippocampus)_left
 +
| style="background:darkkhaki"| darkkhaki
 +
|-
 +
| 39
 +
| FX-R_Fornix_Stria_terminalis_right
 +
| style="background:darkgoldenrod"| darkgoldenrod
 +
|-
 +
| 40
 +
| FX-L_Fornix_Stria_terminalis_left
 +
| style="background:darkgoldenrod"| darkgoldenrod
 +
|-
 +
| 41
 +
| SLF-R_Superior_longitudinal_fasciculus_right
 +
| style="background:lightgray"| lightgray
 +
|-
 +
| 42
 +
| SLF-L_Superior_longitudinal_fasciculus_left
 +
| style="background:lightgray"| lightgray
 +
|-
 +
| 43
 +
| SFO-R_Superior_fronto-occipital_fasciculus_right
 +
| style="background:darkgrey"| darkgrey
 +
|-
 +
| 44
 +
| SFO-R_Superior_fronto-occipital_fasciculus_left
 +
| style="background:darkgrey"| darkgrey
 +
|-
 +
| 45
 +
| IFO-R_Inferior_fronto-occipital_fasciculus_right
 +
| style="background:gray"| gray
 +
|-
 +
| 46
 +
| IFO-L_Inferior_fronto-occipital_fasciculus_left
 +
| style="background:gray"| gray
 +
|-
 +
| 47
 +
| UNC-R_Uncinate_fasciculus_right
 +
| style="background:brown"| brown
 
|-
 
|-
−
| 0
+
| 48
−
| Background
+
| UNC-L_Uncinate_fasciculus_left
−
|style="color:white; background:black"| rgba(0,0,0,0)
+
| style="background:brown"| brown
 
|-
 
|-
−
| 1
+
| 49
−
| MCP_Middle_cerebellar_peduncle
+
| TAP-R_Tapetum_right
−
| style="background:gold"| gold
+
| style="background:mistyrose"| mistyrose
 
|-
 
|-
−
| 2
+
| 50
−
| PCT_Pontine_crossing_tract_(a_part_of_MCP)
+
| TAP-L_Tapetum_left
−
| style="background:violet"| violet
+
| style="background:mistyrose"| mistyrose
 
|}
 
|}
−
 
−
.vtk
 
−
Model_3_GCC_Genu_of_corpus_callosum.vtk
 
−
Model_4_BCC_Body_of_corpus_callosum.vtk
 
−
Model_5_SCC_Splenium_of_corpus_callosum.vtk
 
−
Model_6_FX_Fornix_(column_and_body_of_fornix).vtk
 
−
Model_7_CST-R_Corticospinal_tract_right.vtk
 
−
Model_8_CST-L_Corticospinal_tract_left.vtk
 
−
Model_9_ML-R_Medial_lemniscus_right.vtk
 
−
Model_10_ML-L_Medial_lemniscus_left.vtk
 
−
Model_11_ICP-R_Inferior_cerebellar_peduncle_right.vtk
 
−
Model_12_ICP-L_Inferior_cerebellar_peduncle_left.vtk
 
−
Model_13_SCP-R_Superior_cerebellar_peduncle_right.vtk
 
−
Model_14_SCP-L_Superior_cerebellar_peduncle_left.vtk
 
−
Model_15_CP-R_Cerebral_peduncle_right.vtk
 
−
Model_16_CP-L_Cerebral_peduncle_left.vtk
 
−
Model_17_ALIC-R_Anterior_limb_of_internal_capsule_right.vtk
 
−
Model_18_ALIC-L_Anterior_limb_of_internal_capsule_left.vtk
 
−
Model_19_PLIC-R_Posterior_limb_of_internal_capsule_right.vtk
 
−
Model_20_PLIC-L_Posterior_limb_of_internal_capsule_left.vtk
 
−
Model_21_RLIC-R_Retrolenticular_part_of_internal_capsule_right.vtk
 
−
Model_22_RLIC-L_Retrolenticular_part_of_internal_capsule_left.vtk
 
−
Model_23_ACR-R_Anterior_corona_radiata_right.vtk
 
−
Model_24_ACR-L_Anterior_corona_radiata_left.vtk
 
−
Model_25_SCR-R_Superior_corona_radiata_right.vtk
 
−
Model_26_SCR-L_Superior_corona_radiata_left.vtk
 
−
Model_27_PCR-R_Posterior_corona_radiata_right.vtk
 
−
Model_28_PCR-L_Posterior_corona_radiata_left.vtk
 
−
Model_29_PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right.vtk
 
−
Model_30_PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left.vtk
 
−
Model_31_SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right.vtk
 
−
Model_32_SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left.vtk
 
−
Model_33_EC-R_External_capsule_right.vtk
 
−
Model_34_EC-L_External_capsule_left.vtk
 
−
Model_35_CGC-R_Cingulum_(cingulate_gyrus)_right.vtk
 
−
Model_36_CGC-L_Cingulum_(cingulate_gyrus)_left.vtk
 
−
Model_37_CGH-R_Cingulum_(hippocampus)_right.vtk
 
−
Model_38_CGH-L_Cingulum_(hippocampus)_left.vtk
 
−
Model_39_FX-R_Fornix_Stria_terminalis_right.vtk
 
−
Model_40_FX-L_Fornix_Stria_terminalis_left.vtk
 
−
Model_41_SLF-R_Superior_longitudinal_fasciculus_right.vtk
 
−
Model_42_SLF-L_Superior_longitudinal_fasciculus_left.vtk
 
−
Model_43_SFO-R_Superior_fronto-occipital_fasciculus_right.vtk
 
−
Model_44_SFO-R_Superior_fronto-occipital_fasciculus_left.vtk
 
−
Model_45_IFO-R_Inferior_fronto-occipital_fasciculus_right.vtk
 
−
Model_46_IFO-L_Inferior_fronto-occipital_fasciculus_left.vtk
 
−
Model_47__UNC-R_Uncinate_fasciculus_right.vtk
 
−
Model_48__UNC-L_Uncinate_fasciculus_left.vtk
 
−
Model_49_TAP-R_Tapatum_right.vtk
 
−
Model_50_TAP-L_Tapatum_left.vtk
 

Latest revision as of 17:31, 19 May 2010

Home < Slicer3:Mori-Atlas labels
Back to LUTs and Ontologies

Look-up Table for the Mori WM Atlas labels

Work in progress.

integer_label text_label color
0 Background rgba(0,0,0,0)
1 MCP_Middle_cerebellar_peduncle gold
2 PCT_Pontine_crossing_tract_(a_part_of_MCP) genotype navajowhite
3 GCC_Genu_of_corpus_callosum plum
4 BCC_Body_of_corpus_callosum pink
5 SCC_Splenium_of_corpus_callosum deeppink
6 FX_Fornix_(column_and_body_of_fornix) peru
7 CST-R_Corticospinal_tract_right tan
8 CST-L_Corticospinal_tract_left tan
9 ML-R_Medial_lemniscus_right mediumspringgreen
10 ML-L_Medial_lemniscus_left mediumspringgreen
11 ICP-R_Inferior_cerebellar_peduncle_right palegreen
12 ICP-L_Inferior_cerebellar_peduncle_left palegreen
13 SCP-R_Superior_cerebellar_peduncle_right bisque
14 SCP-L_Superior_cerebellar_peduncle_left bisque
15 CP-R_Cerebral_peduncle_right khaki
16 CP-L_Cerebral_peduncle_left khaki
17 ALIC-R_Anterior_limb_of_internal_capsule_right lightskyblue
18 ALIC-L_Anterior_limb_of_internal_capsule_left lightskyblue
19 PLIC-R_Posterior_limb_of_internal_capsule_right dodgerblue
20 PLIC-L_Posterior_limb_of_internal_capsule_left dodgerblue
21 RLIC-R_Retrolenticular_part_of_internal_capsule_right deepskyblue
22 RLIC-L_Retrolenticular_part_of_internal_capsule_left deepskyblue
23 ACR-R_Anterior_corona_radiata_right powderblue
24 ACR-L_Anterior_corona_radiata_left powderblue
25 SCR-R_Superior_corona_radiata_right blue
26 SCR-L_Superior_corona_radiata_left blue
27 PCR-R_Posterior_corona_radiata_right skyblue
28 PCR-L_Posterior_corona_radiata_left skyblue
29 PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right sandybrown
30 PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left sandybrown
31 SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right peachpuff
32 SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left peachpuff
33 EC-R_External_capsule_right darksalmon
34 EC-L_External_capsule_left darksalmon
35 CGC-R_Cingulum_(cingulate_gyrus)_right mediumseagreen
36 CGC-L_Cingulum_(cingulate_gyrus)_left mediumseagreen
37 CGH-R_Cingulum_(hippocampus)_right darkkhaki
38 CGH-L_Cingulum_(hippocampus)_left darkkhaki
39 FX-R_Fornix_Stria_terminalis_right darkgoldenrod
40 FX-L_Fornix_Stria_terminalis_left darkgoldenrod
41 SLF-R_Superior_longitudinal_fasciculus_right lightgray
42 SLF-L_Superior_longitudinal_fasciculus_left lightgray
43 SFO-R_Superior_fronto-occipital_fasciculus_right darkgrey
44 SFO-R_Superior_fronto-occipital_fasciculus_left darkgrey
45 IFO-R_Inferior_fronto-occipital_fasciculus_right gray
46 IFO-L_Inferior_fronto-occipital_fasciculus_left gray
47 UNC-R_Uncinate_fasciculus_right brown
48 UNC-L_Uncinate_fasciculus_left brown
49 TAP-R_Tapetum_right mistyrose
50 TAP-L_Tapetum_left mistyrose
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