Slicer3:Transition of Slicer2.x Modules - Revision history

Marianna at 18:17, 20 May 2008

2008-05-20T18:17:19Z

Marianna at 18:14, 20 May 2008

2008-05-20T18:14:55Z

Marianna: 2 revisions

2008-05-15T17:53:28Z

2 revisions

Andy: Update from Wiki

2006-12-18T13:40:38Z

Update from Wiki

Andy: Update from Wiki

2006-12-18T13:40:37Z

Update from Wiki

New page

== Summary Page ==

[[AHM_2006:ProjectsSlicerModuleTransition|Goal/Questions/Answers slide from AHM 2006]]

== Plan of Attack ==

In Slicer2:

* [[Slicer:Slicer2_Porting_to_VTK5|Slicer:Slicer2_Porting_to_VTK5]]
** Compiling with changes to the C++ code, maintaining backward compatibility with VTK 4.x and Slicer 2
** Editing the Tcl interface to work with the ported C++ code
** Write test cases to define the gold standard we will compare Slicer3 against see [[Slicer3:Transition_Testing|[1]]]

In Slicer3:

* Port the threads of control in the modules from Tcl to C++
* Dynamic discovery and loading of modules
* Write a template for a Slicer3 module
** Illustrate coding and documentation standards and style
* Write test templates in C++ and tcl
** Will have different styles of tests, some that render images and some that produce numerical output, one template for each

== Preliminary Notes ==

* Focus on the data handling first, not the UI
** Each module expects to be handed a frame to populate
** Call the new data model functions
** Replace global arrays with the new data model
** The data model can be quiered by pipes or shared memory, but the API will be C++
* Try to come up with a semi automatic translation method
* First modules to transition:
** Kilians segmenter
** Ibrowser
** fMRI engine
** DTI engine
* TBD:
** List all the modules and rate difficulty in transition, UI vs data level
** Migrate old mrml into new coordinate manager space
*** Look at the ITK visitor functionality to traverse a tree and get transforms
*** xpath

== List of Modules ==

'''Currently in Base'''

* Alignments.tcl
* Anatomy.tcl
* Anno.tcl
* Colors.tcl
* CrossSection.tcl
* Custom.tcl
* CustomCsys.tcl
* Data.tcl
* Editor/
** EdChangeIsland.tcl
** EdChangeLabel.tcl
** EdDraw.tcl
** EdDraw2.tcl
** EdErode.tcl
** EdIdentifyIslands.tcl
** EdLabelVOI.tcl
** EdMeasureIsland.tcl
** EdNone.tcl
** EdPhaseWire.tcl
** EdRemoveIslands.tcl
** EdSaveIsland.tcl
** EdThreshold.tcl
* Editor.tcl
* Endoscopic.tcl
* Fiducials.tcl
* Guidance.tcl
* Locator.tcl
* Measure.tcl
* MeasureVol.tcl
* ModelCompare.tcl
* ModelHierarchy.tcl
* ModelMaker.tcl
* Models.tcl
* Navigator.tcl
* Options.tcl
* OsteoPlan.tcl
* PathPlanning.tcl
* Realtime.tcl
* SessionLog.tcl
* Slices.tcl
* Tester.tcl
* TetraMesh.tcl
* TwinDisplay.tcl
* View.tcl
* VolRend.tcl
* VolumeMath.tcl
* Volumes/
** VolBasic.tcl
** VolDicom.tcl
** VolHeader.tcl
** VolTensor.tcl
* Volumes.tcl

<br />'''Currently in Modules'''

Tcl and Cxx code:

* BIRNDUP
* LDMMViewer
* MultiVolumeReader
* iSlicer
* vtkAG
* vtkAffineSegment
* vtkAnalyze
* vtkBXH
* vtkCISGFile
* vtkCompareModule
* vtkCorCTA
* vtkDTMRI
* vtkEMAtlasBrainClassifier
* vtkEMLocalSegment
* vtkEditorGeometryDraw
* vtkFMRIEngine
* vtkFSLReader
* vtkFastMarching
* vtkFluxDiffusion
* vtkFreeSurferReaders
* vtkITK
* vtkIbrowser
* vtkImageSmooth
* vtkLevelSets
* vtkMorphometrics
* vtkNormalize
* vtkQueryAtlas
* vtkRealignResample
* vtkRigidIntensityRegistration
* vtkTeem
* vtkTensorUtil
* vtkVolumeTextureMapping

Only tcl code:

{| border="1"
! Module Name
! Notes
|-
| vtkTransformVolume
|-
| vtkSiemensMosaicReader
|-
| vtkSubVolume
|-
| vtkMIRIADSegment
|-
| vtkCustomModule
|}

<br /> [[Slicer3|Back to Slicer 3.0]]]

@@ Line 10: / Line 10: @@
 ** Compiling with changes to the C++ code, maintaining backward compatibility with VTK 4.x and Slicer 2
 ** Editing the Tcl interface to work with the ported C++ code
-** Write test cases to define the gold standard we will compare Slicer3 against see [[Slicer3:Transition_Testing|[1]]]
+** Write test cases to define the gold standard we will compare Slicer3 against, see [[Slicer3:Transition_Testing|here.]]
 In Slicer3:
@@ Line 23: / Line 23: @@
 Done:
-* [[2006_Project_Week_MIT_Migrating_Slicer2.x_Modules_to_Slicer3|ModelMaker]]
+* [http://www.na-mic.org/Wiki/index.php/2006_Project_Week_MIT_Migrating_Slicer2.x_Modules_to_Slicer3  ModelMaker]
 In Progress:

@@ Line 1: / Line 1: @@
 == Summary Page ==
-[[AHM_2006:ProjectsSlicerModuleTransition|Goal/Questions/Answers slide from AHM 2006]]
+[http://www.na-mic.org/Wiki/index.php/AHM_2006:ProjectsSlicerModuleTransition Goal/Questions/Answers slide from AHM 2006]
 == Plan of Attack ==
@@ Line 158: / Line 158: @@
 | vtkCustomModule
 |}

← Older revision	Revision as of 17:53, 15 May 2008
(No difference)

@@ Line 16: / Line 16: @@
 * Port the threads of control in the modules from Tcl to C++
 * Dynamic discovery and loading of modules
-* Write a template for a Slicer3 module
+* Write a template for a Slicer3 module [[Slicer3:Transition_of_Slicer2.x_Modules:Template_Notes|Template Notes]]
 ** Illustrate coding and documentation standards and style
 * Write test templates in C++ and tcl
 ** Will have different styles of tests, some that render images and some that produce numerical output, one template for each
 == Preliminary Notes ==