https://www.slicer.org/w/index.php?action=history&feed=atom&title=Slicer3%3ALDDMM 2026-04-23T06:07:01Z Revision history for this page on the wiki MediaWiki 1.33.0 https://www.slicer.org/w/index.php?title=Slicer3:LDDMM&diff=4465&oldid=prev 2008-05-19T21:31:27Z

<p><span dir="auto"><span class="autocomment">Register (free!)</span></span></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 21:31, 19 May 2008</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l9" >Line 9:</td> <td colspan="2" class="diff-lineno">Line 9:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Register (free!) ===</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Register (free!) ===</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* Register your email address with [http://www.mristudio.org <del class="diffchange diffchange-inline">| </del>MRIStudio].</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* Register your email address with [http://www.mristudio.org MRIStudio].</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Parameters ===</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Parameters ===</div></td></tr> </table>

Marianna https://www.slicer.org/w/index.php?title=Slicer3:LDDMM&diff=4464&oldid=prev 2008-05-19T21:31:10Z

<p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 21:31, 19 May 2008</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3" >Line 3:</td> <td colspan="2" class="diff-lineno">Line 3:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Make use of the remote nonlinear registration server provided by CIS at JHU.  The functionality makes use of the back end server developed as part of the [http://www.mristudio.org | MRIStudio] software.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Make use of the remote nonlinear registration server provided by CIS at JHU.  The functionality makes use of the back end server developed as part of the [http://www.mristudio.org | MRIStudio] software.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Steps here are based on this <del class="diffchange diffchange-inline">information:</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Steps here are based on this <ins class="diffchange diffchange-inline">[</ins>https://www.mristudio.org/wiki/user_manual/landmarker/VolumeLDDMM <ins class="diffchange diffchange-inline">information]</ins></div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>https://www.mristudio.org/wiki/user_manual/landmarker/VolumeLDDMM</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Steps ==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Steps ==</div></td></tr> </table>

Marianna https://www.slicer.org/w/index.php?title=Slicer3:LDDMM&diff=3885&oldid=prev 2008-05-15T18:02:36Z

<p>1 revision</p> <table class="diff diff-contentalign-left" data-mw="interface"> <tr class="diff-title" lang="en"> <td colspan="1" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="1" style="background-color: #fff; color: #222; text-align: center;">Revision as of 18:02, 15 May 2008</td> </tr><tr><td colspan="2" class="diff-notice" lang="en"><div class="mw-diff-empty">(No difference)</div> </td></tr></table>

Marianna https://www.slicer.org/w/index.php?title=Slicer3:LDDMM&diff=3884&oldid=prev 2007-10-19T22:26:04Z

<p><span dir="auto"><span class="autocomment">Goal</span></span></p> <p><b>New page</b></p><div>== Goal == <br /> <br /> Make use of the remote nonlinear registration server provided by CIS at JHU. The functionality makes use of the back end server developed as part of the [http://www.mristudio.org | MRIStudio] software.<br /> <br /> Steps here are based on this information:<br /> https://www.mristudio.org/wiki/user_manual/landmarker/VolumeLDDMM<br /> <br /> == Steps ==<br /> <br /> === Register (free!) ===<br /> * Register your email address with [http://www.mristudio.org | MRIStudio].<br /> <br /> === Parameters ===<br /> <br /> * Create an LDDMM configuration file (lddmm.conf)<br /> <br /> &lt;pre&gt;<br /> IN_D=3<br /> SIMSTEPS=1000<br /> IN_TIMESTEPS=10<br /> DELTA=0.1<br /> EPSILON=0.0000000001<br /> IN_PROCS_Z=1<br /> IN_PROCS_Y=1<br /> IN_PROCS_X=1<br /> ALPHA=0.005<br /> GAMMA=1<br /> POWERL=1<br /> PADI=20<br /> PADH=5<br /> NORM_GRAD=1000<br /> RESTART=0<br /> SIGMA=1<br /> ERROR=0.02<br /> CH_EPSILON=25<br /> &lt;/pre&gt;<br /> <br /> * Create a zip file with the following contents:<br /> <br /> &lt;pre&gt;<br /> $ unzip -l 4b16cc20106d2ca5b1da76d08aa41efc.zip <br /> Archive: 4b16cc20106d2ca5b1da76d08aa41efc.zip<br /> Length Date Time Name<br /> -------- ---- ---- ----<br /> 7221032 09-04-07 16:37 Template.img<br /> 348 09-04-07 16:37 Template.hdr<br /> 7221032 09-04-07 16:37 Target.img<br /> 348 09-04-07 16:37 Target.hdr<br /> 16 09-04-07 16:37 identity.txt<br /> 139 09-04-07 16:37 LocalAddress.txt<br /> 227 09-04-07 16:37 lddmm.conf<br /> -------- -------<br /> 14443142 7 files<br /> &lt;/pre&gt;<br /> <br /> ** Images must be in Analyze format with the given names<br /> ** identity.txt contains the email address registered at the MRIStudio.org site<br /> ** LocalAddress.txt can be a placeholder like the following:<br /> &lt;pre&gt;<br /> Template<br /> DUMMY<br /> Target<br /> DUMMY<br /> &lt;/pre&gt;<br /> <br /> * After creating the zip, run md5 and use that as the new name of the zip. E.g.<br /> <br /> $ md5 tmp.zip <br /> MD5 (tmp.zip) = 4b16cc20106d2ca5b1da76d08aa41efc<br /> $ mv tmp.zip 4b16cc20106d2ca5b1da76d08aa41efc.zip<br /> <br /> === Upload ===<br /> <br /> * Send the new zip file over to the server using anonymous ftp:<br /> <br /> ftp anonymous@ftp.mristudio.org<br /> (login with your email address as password)<br /> cd /pub/INCOMING/lddmm-volume/process-queue<br /> put 4b16cc20106d2ca5b1da76d08aa41efc.zip<br /> <br /> You will get email when the process is complete with a link to the output data.</div>

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