Slicer3:HID - Revision history

Wjp: /* Steps for local version of HID to test */

2008-11-10T19:44:12Z

Steps for local version of HID to test

Wjp: /* How to to tag each MRML file */

2008-11-10T19:43:03Z

How to to tag each MRML file

Wjp: /* How to to Tag each MRML file */

2008-11-10T19:41:59Z

How to to Tag each MRML file

Wjp: /* How to create MRML file */

2008-11-10T19:41:49Z

How to create MRML file

Wjp: New page: == Setting up Slicer3 & HID prototype == === Steps for local version of HID to test === * Get Burak access to a linux box in SPL that can host a copy of HID db * Install the following: *...

2008-11-10T19:41:21Z

New page: == Setting up Slicer3 & HID prototype == === Steps for local version of HID to test === * Get Burak access to a linux box in SPL that can host a copy of HID db * Install the following: *...

New page

== Setting up Slicer3 & HID prototype ==

=== Steps for local version of HID to test ===

* Get Burak access to a linux box in SPL that can host a copy of HID db
* Install the following:
** Java 1.6
** Apache Ant
** Apache Tomcat
** Postgres 8.0
* Create HID platform:
** REST proxy
** HID web services
** Populate Postgres db
* Finish Slicer's HIDHandler to transact with HID web services.
* Write a script to generate MRML files from FIPS and FreeSurfer phII data
* Tag each MRML file and store in DB (post)

This is our intermediate solution prior to implementing SSL/curl. '''Question: should we implement this first, or wait for SSL/curl solution?'''

=== How to create MRML file ===
* use curl to find all data required for QueryAtlas, get uri, use in MRML file.
* post MRML file and tag.

=== How to to Tag each MRML file ===
* File_Type
* Subject
* Experiment
* VisitID
* Segment (modality of the data you associate the MRML file with, such as FreeSurfer, FIPS statistics, etc... Best to leave off the segment tag, then MRML file is stored at the visit level.

@@ Line 3: / Line 3: @@
 === Steps for local version of HID to test ===
-* Get Burak access to a linux box in SPL that can host a copy of HID db
+* Give Burak access to a linux box in SPL that can host a copy of HID db
 * Install the following:
 ** Java 1.6
@@ Line 9: / Line 9: @@
 ** Apache Tomcat
 ** Postgres 8.0
-* Create HID platform:
+* Create HID platform (Burak has agreed to do this part):
 ** REST proxy
 ** HID  web services
 ** Populate Postgres db
-* Finish Slicer's HIDHandler to transact with HID web services.
+* Finish Slicer's HIDHandler to transact with HID web services (wjp will do).
 * Write a script to generate MRML files from FIPS and FreeSurfer phII data
 * Tag each MRML file and store in DB (post)

@@ Line 28: / Line 28: @@
 * Experiment
 * VisitID
-* Segment (modality of the data you associate the MRML file with, such as FreeSurfer, FIPS statistics, etc... Best to leave off the segment tag, then MRML file is stored at the visit level.
+* Segment (modality of the data you associate the MRML file with, such as FreeSurfer, FIPS statistics, etc... Without the segment tag, MRML file will be stored at the visit level, which may be appropriate.

@@ Line 23: / Line 23: @@
 * post MRML file with required tags.
-=== How to to Tag each MRML file ===
+=== How to to tag each MRML file ===
 * File_Type
 * Subject

@@ Line 21: / Line 21: @@
 === How to create MRML file ===
 * use curl to find all data required for QueryAtlas, get uri, use in MRML file.
-* post MRML file and tag.
+* post MRML file with required tags.
 === How to to Tag each MRML file ===