https://www.slicer.org/w/index.php?action=history&feed=atom&title=Slicer3%3AGrid_Integration
Slicer3:Grid Integration - Revision history
2026-05-04T19:45:22Z
Revision history for this page on the wiki
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https://www.slicer.org/w/index.php?title=Slicer3:Grid_Integration&diff=4429&oldid=prev
Marianna at 20:44, 19 May 2008
2008-05-19T20:44:47Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 20:44, 19 May 2008</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>'''Current Tools'''</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>'''Current Tools'''</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* condor_submission page can be found [<del class="diffchange diffchange-inline">[</del>Engineering:Project:Condor_Job_Submission#Syntax_Strawman<del class="diffchange diffchange-inline">:|</del>here<del class="diffchange diffchange-inline">]</del>]</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* condor_submission page can be found [<ins class="diffchange diffchange-inline">http://www.na-mic.org/Wiki/index.php/</ins>Engineering:Project:Condor_Job_Submission#Syntax_Strawman <ins class="diffchange diffchange-inline"> </ins>here]</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> namic-submit [--save-submit-file <submitfile>] [--job-directory <jobdir>] <cmd> [<args>...]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> namic-submit [--save-submit-file <submitfile>] [--job-directory <jobdir>] <cmd> [<args>...]</div></td></tr>
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Marianna
https://www.slicer.org/w/index.php?title=Slicer3:Grid_Integration&diff=3865&oldid=prev
Marianna: 1 revision
2008-05-15T18:01:47Z
<p>1 revision</p>
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<td colspan="1" style="background-color: #fff; color: #222; text-align: center;">Revision as of 18:01, 15 May 2008</td>
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Marianna
https://www.slicer.org/w/index.php?title=Slicer3:Grid_Integration&diff=3864&oldid=prev
Lorensen at 20:35, 27 December 2006
2006-12-27T20:35:15Z
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<p><b>New page</b></p><div>'''Project'''<nowiki>: Integration of NAMIC Kit and the 'Grid' </nowiki><br />
<br />
'''Goals'''<nowiki>: </nowiki><br />
<br />
* Supply Grid execution components to [[Slicer3:Execution_Model|Slicer3 Execution Model]]<br />
* Clearly define expectations and dependencies for grid execution<br />
<br />
'''Current Status'''<nowiki>: </nowiki><br />
<br />
* Validation as primary use case for grid<br />
<br />
# Create JSON-aware Grid component to interface with NAMIC executables<br />
# parameter sweep through quality / contrast space using [http://www.na-mic.org:8000/websvn/filedetails.php?repname=NAMICSandBox&path=%2FNonRigidRegistrationForEchoPlanarImaging%2FMultiModalityRigidRegistrationCommand.cxx&rev=0&sc=0: NonRigidRegistrationForEchoPlanarImaging]<br />
<br />
'''Current Tools'''<br />
<br />
* condor_submission page can be found [[Engineering:Project:Condor_Job_Submission#Syntax_Strawman:|here]]<br />
<br />
namic-submit [--save-submit-file <submitfile>] [--job-directory <jobdir>] <cmd> [<args>...]<br />
<br />
where:<br />
<br />
* ''submitfile'' is a condor job submit file; if not specified a temp file is generated<br />
* ''jobdir'' is a working state directory for a set of submissions that you want to later observe with namic-wait or manually inspect<br />
* ''cmd'' is a shell script or executable that can be run on the remote environment<br />
* ''args'' are arguments to the cmd<br />
<br />
functionality: namic-submit takes the given command and args and runs the job on a condor-determined external compute node. By default stdin, stdout, and stderr of the ''cmd'' are mapped to the corresponding files of namic-submit.<br />
<br />
If srb proxy is not set up, namic-submit prompts you for srb user id and password and sets up proxy.<br />
<br />
namic-wait [--job-directory <jobdir>] [<groupid>]<br />
<br />
where:<br />
<br />
* ''jobdir'' is a directory that corresponds to the state for jobs submitted by namic-submit<br />
<br />
functionality: namic-wait blocks until all jobs submitted with the given groupid have completed running<br />
<br />
<br /><br />
<br />
'''Team Members'''<nowiki>: </nowiki><br />
<br />
* Jeff Grethe- UCSD<br />
* Brendan Faherty - UCSD<br />
* Steve Pieper - BWH<br />
* Daniel Blezek - GE</div>
Lorensen