Grundlett: Text replacement - "https?:\/\/wiki.slicer.org\/slicerWiki\/index.php\/([^ ]+) " to "https://www.slicer.org/wiki/$1"

2019-11-27T14:53:31Z

Text replacement - "https?:\/\/wiki.slicer.org\/slicerWiki\/index.php\/([^ ]+) " to "https://www.slicer.org/wiki/$1"

Swallace: /* Application / CLI Modules */

2010-05-07T17:20:43Z

Application / CLI Modules

Ibanez at 22:13, 1 May 2010

2010-05-01T22:13:18Z

Ibanez: Created page with ' {|class="wikitable sortable labelpage labelpagetable" border="1" style="text-align:center" |+ Slicer 3.6 Quality Assurance |- !Score!!Name!!Documentation!!Help i…'

2010-05-01T22:06:13Z

Created page with ' {|class="wikitable sortable labelpage labelpagetable" border="1" style="text-align:center" |+ <big>Slicer 3.6 Quality Assurance</big> |- !Score!!Name!!Documentation!!Help <ref>i…'

New page

{|class="wikitable sortable labelpage labelpagetable" border="1" style="text-align:center"
|+ <big>Slicer 3.6 Quality Assurance</big>
|-
!Score!!Name!!Documentation!!Help <ref>including link to website documentation</ref>!!Acknowledgment <ref>including name of author and of supervisor</ref> !!Test coverage <ref>in % for non-interactive part</ref>!!valgrind errors!!Current Owner!!Comments <ref>Test coverage percentage determined by: [# lines code covered / total # lines of code (covered and non-covered) *100] of relevant .cxx and .h files</ref>!!3.6 Documentation Name <ref>http://wiki.slicer.org/slicerWiki/index.php/Documentation-3.6</ref>
|-
|style="background:gold"|1Gold||style="width:33%"|my module||complete||yes and yes||yes, yes, yes||80%||0|| ||||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| DiffusionWeightedTest ||no||no||yes and yes|| 69.8% || 0||CF Westin||||n/a||
|-
|style="background:silver"|2Silver||style="width:33%"| DiffusionTensorEstimation || complete ||yes and no||yes and yes|| 79.7% || 9 ||CF Westin||||same||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| DiffusionTensorMathematics ||no||yes and no||yes and yes|| 56.2% || 5||CF Westin||||Diffusion Tensor Scalar Measurements||
|-
|style="background:gold"|1Gold||style="width:33%"| OrientImage ||complete||yes and yes||yes and yes|| 85.7% || 0 ||Bill Lorensen||||OrientImages||
|-
|style="background:darkgoldenrod"|3Bronze||style="width:33%"| LinearRegistration ||complete||yes and no||yes and yes|| 66.7% || 4 ||Daniel Blezek||||same||
|-
|style="color:white; background:black"|5Coal||style="width:33%"| RigidRegistration ||complete||yes and yes||yes and yes||style="background:red"| 1.0% || 92 ||Daniel Blezek||||same||
|-
|style="background:gold"|1Gold||style="width:33%"| RegisterImages (RegisterImagesMultiRes) ||complete||yes and yes||yes and yes|| 83.5% || Unknown || Casey Goodlett, Stephen Aylward||||same||
|-
|style="color:white; background:black"|5Coal||style="width:33%"| Fast Affine Registration ||complete||yes and no||yes and yes||style="background:red" |1.4% || 82 || Daniel Blezek||||same||
|-
|style="background:gold"|1Gold||style="width:33%"| BSplineDeformableRegistration ||complete||yes and yes||yes and yes|| 82.3% || 6 || Bill Lorensen||||Fast Nonrigid BSpline Registration||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| TestGridTransformRegistration ||no||no||yes and yes || 90.7% || 0 ||Yinglin Lee||||n/a||
|-
|style="background:darkgoldenrod"|3Bronze||style="width:33%"| CheckerBoard ||complete||yes and yes||yes and yes|| 67.4% || 0 ||Bill Lorensen||||CheckerBoard Filter||
|-
|style="background:darkorange"|4Clay||style="width:33%"| ResampleVolume ||complete||yes and yes||yes and yes|| 57.1% || 0 ||Bill Lorensen||||same||
|-
|style="background:gold"|1Gold||style="width:33%"| PolyDataToLabelmap ||complete||yes and yes||yes and yes|| 87.9% || 0 ||Nicole Aucoin, Xiaodong Tao||||same||
|-
|style="background:darkorange"|4Clay||style="width:33%"| GaussianBlurImageFilter ||complete||yes and no||yes and yes|| 55.9% || 0 ||Julien Jomier, Stephen Aylward||||Gaussian Blur||
|-
|style="background:gold"|1Gold||style="width:33%"| ConfidenceConnected||complete||yes and no||yes and yes|| 87.5% || 0 ||Jim Miller||||Simple region growing||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| ExecutionModelTour ||no||yes and yes||yes and yes|| 87.2% || 0 ||Daniel Blezek, Bill Lorensen||||n/a||
|-
|style="background:gold"|1Gold||style="width:33%"| ImageReadDicomWrite ||complete||yes and yes||yes and yes|| 86.1% || 0 ||Bill Lorensen||||Create a Dicom Series||
|-
|style="background:darkgoldenrod"|3Bronze||style="width:33%"| CurvatureAnisotropicDiffusion ||complete||yes and yes||yes and yes|| 64.3% || 0 ||Bill Lorensen||||same||
|-
|style="background:darkgoldenrod"|3Bronze||style="width:33%"| GradientAnisotropicDiffusion ||complete||yes and yes||yes and yes|| 63.4% || 0 ||Bill Lorensen||||GradientAnisotropicFilter||
|-
|style="background:darkorange"|4Clay||style="width:33%"| MedianImageFilter ||complete||yes and yes||yes and yes|| 51.1% || 0 ||Bill Lorensen||||same||
|-
|style="background:darkgoldenrod"|3Bronze||style="width:33%"| HistogramMatching ||complete||yes and yes||yes and yes|| 65.0% || 0 ||Bill Lorensen||||same||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| OtsuThresholdImageFilter ||no||yes and yes||yes and yes|| 100% || 0 ||Bill Lorensen||||OtsuThreshold||
|-
|style="background:gold"|1Gold||style="width:33%"| OtsuThresholdSegmentation ||complete||yes and no||yes and yes|| 90.9% || 0 ||Bill Lorensen||||same||
|-
|style="background:silver"|2Silver||style="width:33%"| Subtract ||complete||yes and yes||yes and yes|| 71.7% || 0 ||Bill Lorensen||||SubtractImages||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| Multiply ||yes||yes and yes||yes and yes|| 77.6% || 0 ||Bill Lorensen||||MultiplyImages||
|-
|style="background:gold"|1Gold||style="width:33%"| Add ||complete||yes and yes||yes and yes|| 84.9% || 0 ||Bill Lorensen||||AddImages||
|-
|style="background:darkgoldenrod"|3Bronze||style="width:33%"| Threshold ||complete||yes and yes||yes and yes|| 55.8% || 0 ||Nicole Aucoin||||ThresholdImage||
|-
|style="background:gold"|1Gold||style="width:33%"| Mask ||complete||yes and yes||yes and yes|| 80.0% || 0 ||Nicole Aucoin||||Mask Image||
|-
|style="color:white; background:black"|5Coal||style="width:33%"| Cast ||complete||yes and yes||yes and yes||style="background:red"| 14.6% || 0 ||Nicole Aucoin||||Cast Image||
|-
|style="background:gold"|1Gold||style="width:33%"| VotingBinaryHoleFillingImageFilter ||complete||yes and yes||yes and yes|| 100% || 0 ||Bill Lorensen||||Voting Binary Hole Filling||
|-
|style="background:darkorange"|4Clay||style="width:33%"| ModelMaker ||complete||yes and yes||yes and yes|| 57.4% || 1 ||Nicole Aucoin||||same||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| MultipleModelsExample ||no||yes and no||yes and yes||style="background:red"| 1.9%|| 50 ||Bill Lorensen||||n/a||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| GrayscaleModelMaker ||no||yes and no||yes and yes|| 82.1% || 1 ||Bill Lorensen||||same||
|-
|style="background:darkgoldenrod"|3Bronze||style="width:33%"| MergeModels ||yes||yes and yes||yes and yes|| 62.7% || 0 ||Nicole Aucoin, Daniel Haehn||||same||
|-
|style="background:darkorange"|4Clay||style="width:33%"| GrayscaleFillHoleImageFilter ||complete||yes and yes||yes and yes|| 57.1% || 0 ||Bill Lorensen||||Grayscale Fill Hole||
|-
|style="background:darkgoldenrod"|3Bronze||style="width:33%"| GrayscaleGrindPeakImageFilter ||complete||yes and yes||yes and yes|| 64.5% || 0 ||Bill Lorensen||||Grayscale Grind Peak||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| LabelMapSmoothing ||no||yes and no||yes and yes|| 87.9% || 0 ||Dirk Padfield, Josh Cates, Ross Whitaker||||n/a||
|-
|style="color:white; background:black"|5Coal||style="width:33%"| ImageLabelCombine ||complete||yes and no||yes and no||style="background:red"| 7.5% || 50 ||Alex Yarmarkovich||||same||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| ResampleVolume2 ||no||yes and yes||yes and yes||style="background:red"| 46.8% || 0 ||Francois Budin||||Resample Scalar/Vector/DWI Volume||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| ZeroCrossingBasedEdgeDetectionImageFilter ||no||yes and no||yes and yes|| 62.5%|| 0 || Elliot Uvero||||n/a||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| FreesurferSurfaceSectionExtraction ||no||yes and no||yes and yes|| 60.0% || 62 || Sylvain Bouix||||n/a/||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| BRAINSDemonWarp ||complete||yes and no||yes and no|| style="background:red"| 0.0% || Unknown ||Hans Johnson, Greg Harris ||||same||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| BRAINSFit ||complete||yes and yes||yes and yes|| style="background:red"| 0.0% || Unkown || Eun Young Kim||||same||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| BRAINSMush ||complete||no||no|| style="background:red"| 0.0% || Unknown || Hans Johnson||||same||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| BRAINSResample ||no||yes and yes||yes and no|| style="background:red"| 0.0% || Unknown || Hans Johnson||||n/a||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| BRAINSROIAuto ||no||yes and no||yes and no|| style="background:red"| 0.0% || Unknown || Hans Johnson||||n/a||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| DiffusionTensorEstimation BatchMake ||no||yes and no||yes and no|| style="background:red"| 0.0% || Unknown || Lauren O'Donnell||||n/a||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| EMSegment BatchMake||complete||yes and yes||yes and yes|| style="background:red"| 0.0% || Unknown || Julien Jomier, Stephen Aylward, Brad Davis||||EM Segmenter batch||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| Gaussian Blur BatchMake ||complete||yes and yes||yes and yes|| style="background:red"| 0.0% || Unknown || Julien Jomier, Stephen Aylward, Julien Finet||||Gaussian Blur batch||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| RegisterImages BatchMake ||complete||yes and yes||yes and yes|| style="background:red"| 0.0% || Unknown ||Stephen Aylward, Julien Finet||||Register Images batch||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| ResampleScalarVolume BatchMake ||complete||yes and yes||yes and yes|| style="background:red"| 0.0% || Unknown ||Julien Finet||||Resample Volume batch||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| Diffeomorphic Demons Algorithm ||no||no||yes and yes|| style="background:red"| 0.0% || Unknown ||Tom Vercauteren, Ender Konukoglu, Kilian Pohl||||n/a||
|-
|style="color:white; background:black"|5Coal||style="width:33%"| ResampleDTIVolume ||complete||yes and yes||yes and yes|| style="background:red"| 37.0% || 0 ||Francois Budin||||same||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| Rician LMMSE Image Filter ||complete||yes and no||yes and yes|| style="background:red"| 0.0% || Unknown ||Antonio Tristan Vega, Santiago Aja Fernandez, Marc Niethammer||||same||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| Unbiased Non Local Means filter for DWI ||complete||yes and no||yes and yes|| style="background:red"| 0.0% || Unknown ||Antonio Tristán Vega, Santiago Aja-Fernandez||||n/a||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| Joint Rician LMMSE Image Filter ||complete||yes and no||yes and yes|| style="background:red"| 0.0% || Unknown ||Antonio Tristán Vega, Santiago Aja Fernández||||same||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| Extract Skeleton ||no||yes and no||no and yes|| style="background:red"| 0.0% || Unknown ||Pierre Seroul, Martin Styner, Guido Gerig, Stephen Aylward||||n/a||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| MRI Bias Field Correction ||complete||yes and yes||yes and yes|| style="background:red"| 0.0% || Unknown ||Sylvain Jaume||||same||
|-
|style="color:white; background:black"|5Coal||style="width:33%"| N4ITK MRI Bias Correction ||yes||yes and yes||yes and yes|| style="background:red"| 0.0% || Unknown ||Andriy Fedorov||||same||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| ACPC Transform ||complete||yes and yes||yes and yes|| style="background:red"| 0.0% || Unknown ||Nicole Aucoin||||same||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| Mesh Contour Segmentation ||complete||yes and yes||yes and yes|| style="background:red"| 0.0% ||Unknown||Peter Karasev, Karol Chudy, Allen Tannenbaum||||same||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| Utah BSpline Deformable registration ||no||yes and no||yes and yes|| style="background:red"| 0.0% ||Unknown||Sam Gerber, Jim Miller, Steve Pieper, Ross Whitaker||||n/a||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| Calculate Volume Statistics ||no||no||no|| style="background:red"| 0.0% ||0||Tri Ngo||||n/a||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| Generate Connectivity Map ||no||no||no||style="background:red"| 0.0% || Unknown ||Tri Ngo||||n/a||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| ROI Tract Filter ||no||no||no||style="background:red"| 0.0% || Unknown ||Tri Ngo||||n/a||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| Stochastic Tractography Filter ||no||no||no||style="background:red"| 0.0% || Unknown||Tri Ngo||||n/a||
|-
|style="background:hotpink"|6Hazard||style="width:33%"| MIDAS Data and Slicer Tutorials ||no||yes and no||yes and no|| style="background:red"| 0.0% ||Unknown||Patrick Reynolds, Stephen Aylward||||n/a||
|-
|}

<references/>

← Older revision		Revision as of 17:20, 7 May 2010
Line 145:		Line 145:

	<references/>		<references/>
−

	=Luis Ibanez' scoring system=		=Luis Ibanez' scoring system=

← Older revision		Revision as of 22:13, 1 May 2010
Line 1:		Line 1:
		+	= Application / CLI Modules =

	{\|class="wikitable sortable labelpage labelpagetable" border="1" style="text-align:center"		{\|class="wikitable sortable labelpage labelpagetable" border="1" style="text-align:center"
Line 144:		Line 145:

	<references/>		<references/>
		+
		+
		+	=Luis Ibanez' scoring system=
		+
		+	The following scoring will be applied to the '''data processing''' sections of all modules:
		+
		+	{\|class="wikitable sortable labelpage labelpagetable" border="1" style="text-align:center"
		+	\|+ <big>Slicer 3.6 Quality Assurance Scoring</big>
		+	\|-
		+	!Score!!Code Coverage!!Valgrind Errors!!Documentation!!Tutorial
		+	\|-
		+	\|style="background:gold"\| '''1Gold''' \|\| > 80% \|\| 0 \|\|yes \|\| yes
		+	\|-
		+	\|style="background:silver"\| '''2Silver''' \|\| > 70% \|\| < 10 \|\|yes \|\| yes
		+	\|-
		+	\|style="background:darkgoldenrod"\| '''3Bronze''' \|\| > 60% \|\| < 50 \|\|yes \|\| yes
		+	\|-
		+	\|style="background:darkorange"\| '''4Clay''' \|\| > 50% \|\| < 100 \|\|yes \|\| yes
		+	\|-
		+	\|style="color:white; background:black"\| '''5Coal''' \|\|style="background:red"\|< 50% \|\| > 100 \|\| yes \|\| yes
		+	\|-
		+	\|style="color:white; background:hotpink"\| '''6Hazard''' \|\| unknown \|\| unknown \|\| no \|\| no
		+	\|}
		+
		+	The code coverage and Valgrind error must be the ones reported on the Nightly Slicer Dashboard. Anecdotal data is not acceptable.

@@ Line 4: / Line 4: @@
 |+ <big>Slicer 3.6 Quality Assurance</big>
 |-
-!Score!!Name!!Documentation!!Help <ref>including link to website documentation</ref>!!Acknowledgment <ref>including name of author and of supervisor</ref> !!Test coverage <ref>in % for non-interactive part</ref>!!valgrind errors!!Current Owner!!Comments <ref>Test coverage percentage determined by: [# lines code covered / total # lines of code (covered and non-covered) *100] of relevant .cxx and .h files</ref>!!3.6 Documentation Name <ref>http://wiki.slicer.org/slicerWiki/index.php/Documentation-3.6</ref>
+!Score!!Name!!Documentation!!Help <ref>including link to website documentation</ref>!!Acknowledgment <ref>including name of author and of supervisor</ref> !!Test coverage <ref>in % for non-interactive part</ref>!!valgrind errors!!Current Owner!!Comments <ref>Test coverage percentage determined by: [# lines code covered / total # lines of code (covered and non-covered) *100] of relevant .cxx and .h files</ref>!!3.6 Documentation Name <ref>https://www.slicer.org/wiki/Documentation-3.6</ref>|-
 |style="background:gold"|1Gold||style="width:33%"|my module||complete||yes and yes||yes, yes, yes||80%||0|| ||||
 |-

Slicer-3.6-QA-2010-04-29 - Revision history

Grundlett: Text replacement - "https?:\/\/wiki.slicer.org\/slicerWiki\/index.php\/([^ ]+) " to "https://www.slicer.org/wiki/$1"

Swallace: /* Application / CLI Modules */

Ibanez at 22:13, 1 May 2010

Ibanez: Created page with ' {|class="wikitable sortable labelpage labelpagetable" border="1" style="text-align:center" |+ Slicer 3.6 Quality Assurance |- !Score!!Name!!Documentation!!Help i…'