Slicer-3.6-Load-Overview - Revision history

Pieper: /* Label maps */

2010-12-18T13:14:11Z

Label maps

2010-12-18T03:19:23Z

NIfTI, NRRD, Analyze and other Scalar Volume Data

2010-12-16T12:39:26Z

Dicom

2010-12-16T12:38:26Z

DWI Dicom

2010-12-09T19:57:58Z

DWI Dicom

2010-12-07T18:26:59Z

Raw Raster Data

2010-12-07T13:18:34Z

2010-12-07T09:50:52Z

Dicom

2010-12-07T09:49:04Z

2010-12-07T09:46:44Z

@@ Line 17: / Line 17: @@
 ==Label maps==
 Label maps are a special form of volume data sets, where each voxel contains an arbitrary value which has a meaning for the user. At load time you click the label box to let Slicer know that the volume is a label data set. So called "look up tables" (LUTs) associate the label values with a color and a name. Slicer comes with a large number of LUTs. In the volume module you can associate a label data set with a LUT. Slicer also allows the creation of [[Slicer3:LUTs_and_Ontologies#Lookup_tables|custom LUTs]].
 =png, jpeg, tiff Image Stacks=

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 =NIfTI, NRRD, Analyze and other Scalar Volume Data=
 Use the File->Add Volume... dialog to select the header file.  If there is a corresponding image file it will be selected automatically.
 =png, jpeg, tiff Image Stacks=

@@ Line 4: / Line 4: @@
 Use the File->Add Volume... menu to bring up the volume load dialog, navigate to the top folder with your specific data, click on parse directory in the upper right and select your series in the upper right.
-[[Modules:Loading-Data-3.6#Loading_DICOM_Image_Data|See here for more information]]
+[[Modules:Loading-Data-3.6#Loading_DICOM_Image_Data|See here for more information about "Add Volume"]]
 ==DWI Dicom==

@@ Line 7: / Line 7: @@
 ==DWI Dicom==
-<big><big>'''As first step, use the DicomToNrrd module to convert your DWI data from DICOM to NRRD format.'''</big></big>  Load the nrrd format data into Slicer using the File->Add Volume dialog. See [[Modules:DicomToNRRD-3.6|here]] for a list of supported DWI formats.
+<big><big>'''DWI data: As first step, use the [[Modules:DicomToNRRD-3.6|DicomToNrrd module]] to convert your DWI data from DICOM to NRRD format.'''</big></big>
 =NIfTI, NRRD, Analyze and other Scalar Volume Data=

@@ Line 7: / Line 7: @@
 ==DWI Dicom==
-Use the DicomToNrrd module to convert your DWI data from DICOM to NRRD format.  Load the nrrd format data into Slicer using the File->Add Volume dialog.
+<big><big>'''As first step, use the DicomToNrrd module to convert your DWI data from DICOM to NRRD format.'''</big></big>  Load the nrrd format data into Slicer using the File->Add Volume dialog. See [[Modules:DicomToNRRD-3.6|here]] for a list of supported DWI formats.
 =NIfTI, NRRD, Analyze and other Scalar Volume Data=

← Older revision		Revision as of 18:26, 7 December 2010
Line 20:		Line 20:

	=Raw Raster Data=		=Raw Raster Data=
−	We suggest creating a .nhdr ~~text~~ file that describes your data. See [http://teem.sourceforge.net/nrrd/ the nrrd format documentation] for more information.	+	We suggest creating a .nhdr header file that describes your data. See [http://teem.sourceforge.net/nrrd/ the nrrd format documentation] for more information.

@@ Line 2: / Line 2: @@
 =Dicom=
-Use File/add volume, navigate to the top folder with your specific data, click on parse directory in the upper right and select your series in the upper right.
+Use the File->Add Volume... menu to bring up the volume load dialog, navigate to the top folder with your specific data, click on parse directory in the upper right and select your series in the upper right.
 [[Modules:Loading-Data-3.6#Loading_DICOM_Image_Data|See here for more information]]
 ==DWI Dicom==
-Use the dicom to nrrd converter to convert your DWI data from Dicom to nrrd, then load the nrrd format data into Slicer
+Use the DicomToNrrd module to convert your DWI data from DICOM to NRRD format.  Load the nrrd format data into Slicer using the File->Add Volume dialog.
-=Nifti, nrrd, Analyze=
+=NIfTI, NRRD, Analyze and other Scalar Volume Data=
-use File/add data
+Use the File->Add Volume... dialog to select the header file.  If there is a corresponding image file it will be selected automatically.
-=jpeg=
+=png, jpeg, tiff Image Stacks=
-=tiff=
+Note that image stacks contain no spacing information.  Use the Info tab in the Volumes Module to manually enter appropriate spacings (default voxel size is 1 x 1 x 1 millimeter)
-=raw raster data=
+Note that color images can be viewed in slicer, but are not compatible with many of the analysis tools.

← Older revision		Revision as of 09:49, 7 December 2010
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−	[[Documentation-3.6\|Back to ~~documentation~~ 3.6]]	+	[[Documentation-3.6#Introduction\|Back to Documentation 3.6]]

	=Dicom=		=Dicom=