Registration:Categories - Revision history

Meier: /* looking for a set of features: 3DSlicer Registration Feature/Decision Matrix 70px */

2010-06-30T13:07:35Z

looking for a set of features: 3DSlicer Registration Feature/Decision Matrix 70px

Meier: /* looking for a set of features: 3DSlicer Registration Feature/Decision Matrix 70px */

2010-06-30T13:07:17Z

looking for a set of features: 3DSlicer Registration Feature/Decision Matrix 70px

Meier: /* looking for a set of features: 3DSlicer Registration Feature/Decision Matrix 70px */

2010-06-30T13:06:54Z

looking for a set of features: 3DSlicer Registration Feature/Decision Matrix 70px

Meier: /* looking for a set of features: 3DSlicer Registration Feature/Decision Matrix 70px */

2010-06-30T13:06:28Z

looking for a set of features: 3DSlicer Registration Feature/Decision Matrix 70px

Meier: /* choose by Datatype 70px */

2010-05-17T19:47:11Z

choose by Datatype 70px

Meier at 19:46, 17 May 2010

2010-05-17T19:46:24Z

Meier at 19:42, 17 May 2010

2010-05-17T19:42:02Z

Meier at 19:35, 17 May 2010

2010-05-17T19:35:52Z

Meier: /* looking for Brain Image Registration 70px */

2010-05-17T19:31:13Z

looking for Brain Image Registration 70px

Meier: /* looking for Brain Image Registration 70px */

2010-05-17T19:30:30Z

looking for Brain Image Registration 70px

@@ Line 6: / Line 6: @@
 *the matrix below shows which modules support which feature, intended to help you if looking for a method with a particular combination of features.
 *if you would like to see additional criteria or a new module is not yet listed, please let us know: mailto:slicer-users at bwh.harvard.edu
-*se here for an [http://labelpage.halle.us/static/reg/index.html '''interactive method selection tool''']
+*see here for an [http://labelpage.halle.us/static/reg/index.html '''interactive method selection tool''']
 [[Image:Registration_DecisionMatrix.png|left|850px|3DSlicer Registration Feature/Decision Matrix]]

@@ Line 6: / Line 6: @@
 *the matrix below shows which modules support which feature, intended to help you if looking for a method with a particular combination of features.
 *if you would like to see additional criteria or a new module is not yet listed, please let us know: mailto:slicer-users at bwh.harvard.edu
-*se here for an [http://labelpage.halle.us/static/reg/index.html#AC-PC%20transform '''interactive method selection tool''']
+*se here for an [http://labelpage.halle.us/static/reg/index.html '''interactive method selection tool''']
 [[Image:Registration_DecisionMatrix.png|left|850px|3DSlicer Registration Feature/Decision Matrix]]

@@ Line 6: / Line 6: @@
 *the matrix below shows which modules support which feature, intended to help you if looking for a method with a particular combination of features.
 *if you would like to see additional criteria or a new module is not yet listed, please let us know: mailto:slicer-users at bwh.harvard.edu
-*se here for an [http://labelpage.halle.us/static/reg/index.htm '''interactive method selection tool''']
+*se here for an [http://labelpage.halle.us/static/reg/index.html#AC-PC%20transform '''interactive method selection tool''']
 [[Image:Registration_DecisionMatrix.png|left|850px|3DSlicer Registration Feature/Decision Matrix]]

@@ Line 6: / Line 6: @@
 *the matrix below shows which modules support which feature, intended to help you if looking for a method with a particular combination of features.
 *if you would like to see additional criteria or a new module is not yet listed, please let us know: mailto:slicer-users at bwh.harvard.edu
 [[Image:Registration_DecisionMatrix.png|left|850px|3DSlicer Registration Feature/Decision Matrix]]

@@ Line 45: / Line 45: @@
 *'''images, different modality:''' The [[Modules:RegisterImages-Documentation-3.6|'''Expert Automated Registration''']] module performs automated image registration, rigid to affine, based on image intensity similarities. Select Mutual Information as cost function.
 *'''surfaces:''' The [[Modules:PythonSurfaceICPRegistration-Documentation-3.6|'''Surface Registration''' ]] module performs automated registration of surfaces (not images). This is useful if image data directly is unreliable, but surfaces can be produced from segmentations that provide good information about desired alignment.
-*'''fiducials:''' The [[Modules:TransformFromFiducials-Documentation-3.6|'''Fiducial Alignment''']] module can align images based on pairs of manually selected fiducial points (rigid and affine). Two sets of fiducials (fiducial lists) are required, forming matching pairs to be aligned. Details on creating fiducial lists [[Modules:Fiducials-Documentation-3.6|here]].  The [[Modules:ACPCTransform-Documentation-3.6|'''AC-PC Transform''']] module is also a special form of fiducial registration, used to orient '''brain''' images along the anterior- and posterior commissure and midline.
+*'''fiducials:''' The [[Modules:TransformFromFiducials-Documentation-3.6|'''Fiducial Alignment''']] module can align images based on pairs of manually selected fiducial points (rigid and affine). Two sets of fiducials (fiducial lists) are required, forming matching pairs to be aligned. Use the [[Modules:Fiducials-Documentation-3.6|'''Fiducials''' module]] to create fiducial lists.   The [[Modules:ACPCTransform-Documentation-3.6|'''AC-PC Transform''']] module is also a special form of fiducial registration, used to orient '''brain''' images along the anterior- and posterior commissure and midline.
 = <small><small>looking for</small></small> Brain Image Registration [[Image:Registration_HLogo_Brain.png| 70px]]  =

@@ Line 13: / Line 13: @@
 *'''Affine:''' The [[Modules:AffineRegistration-Documentation-3.6|'''Fast Affine Registration''']] module performs automated affine registration.
 *'''Bspline:''' The [[Modules:DeformableB-SplineRegistration-Documentation-3.6|'''Fast Nonrigid BSpline Registration''']] module performs non-rigid automated image registration. With default settings results within <1 minute are common.
 = <small><small>looking for</small></small>  Robustness and/or Precision [[Image:Registration_Precision_icon.png| 70px]]  =
@@ Line 18: / Line 19: @@
 *The [[Modules:RegisterImagesMultiRes-Documentation-3.6|'''Robust Multiresolution Affine Registration''']] module performs robust  automated affine image registration employing a multi-resolution scheme.
 *The [[Modules:Plastimatch|'''Plastimatch''']] module performs automated registration of images from rigid to affine to non-rigid. As a unique feature it provides non-rigid deformation from fiducials, which can be used to "edit/repair" a registration.
 = <small><small>choose by</small></small> DOF  [[Image:Registration_HLogo_DOF.png| 70px]]  =

@@ Line 50: / Line 50: @@
 *The [[Modules:BRAINSDemonWarp|'''BRAINSDemonWarp''' ]] module performs automated registration of brain MRI based on an optic flow mechanism. Deformations here are significantly more "fluid" (i.e. have more DOF and are less constrained) than for the nonrigid BSpline method.
 *The [[Modules:HammerRegistration| '''HAMMER''']] Module performs elastic (non-rigid) alignment of '''brain''' images of different individuals based on tissue class segmentation and intensity (experimental stage).
 = <small><small>looking for</small></small> Tools for Preparing Data for Registration [[Image:Registration_Masking_icon.png| 70px]]  =

@@ Line 48: / Line 48: @@
 *The [[Modules:ACPCTransform-Documentation-3.6|'''AC-PC Transform''']] module is used to orient '''brain''' images along predefined anatomical landmarks: (manually defined)  fiducials for the inter-hemispheral midline, anterior- and posterior commissure are used to align an image such that these landmarks become vertical and horizontal, respectively.
 **The [[Modules:BRAINSFit| '''BAINSfit''']] module includes a  registration based on a Bspline transform. Initially designed for but not limited to '''brain''' images. Also includes many options such as masking support.
-*'''non rigid (fluid) >100 DOF'''
+*The [[Modules:BRAINSDemonWarp|'''BRAINSDemonWarp''' ]] module performs automated registration of brain MRI based on an optic flow mechanism. Deformations here are significantly more "fluid" (i.e. have more DOF and are less constrained) than for the nonrigid BSpline method.
-**The [[Modules:BRAINSDemonWarp|'''BRAINSDemonWarp''' ]] module performs automated registration of brain MRI based on an optic flow mechanism. Deformations here are significantly more "fluid" (i.e. have more DOF and are less constrained) than for the nonrigid BSpline method.
+*The [[Modules:HammerRegistration| '''HAMMER''']] Module performs elastic (non-rigid) alignment of '''brain''' images of different individuals based on tissue class segmentation and intensity (experimental stage).
 = <small><small>looking for</small></small> Tools for Preparing Data for Registration [[Image:Registration_Masking_icon.png| 70px]]  =