Modules:SkullStripperModule - Revision history

Taox: /* Usability issues */

2010-05-25T15:04:25Z

Usability issues

Taox: /* Usability issues */

2010-05-25T15:03:33Z

Usability issues

Taox: /* Module Name */

2010-05-25T15:02:27Z

Module Name

Taox: /* Module Name */

2010-05-25T15:00:36Z

Module Name

Taox: /* References */

2010-05-25T14:52:26Z

References

Taox: Created page with 'Return to Slicer 3.6 Documentation NOTOC ===Module Name=== Skull Stripper {| border="0"http://wiki.slicer.org/slicerWiki/index.php?title=Modules:Fuzzy…'

2010-05-25T14:51:16Z

Created page with 'Return to Slicer 3.6 Documentation __NOTOC__ ===Module Name=== Skull Stripper {| border="0"http://wiki.slicer.org/slicerWiki/index.php?title=Modules:Fuzzy…'

New page

[[Documentation-3.6|Return to Slicer 3.6 Documentation]]

__NOTOC__
===Module Name===
Skull Stripper

{| border="0"http://wiki.slicer.org/slicerWiki/index.php?title=Modules:FuzzySegmentationModule&action=edit
|[[Image:SkullStripper-3-6.png|thumb|280px|Module UI]]
| style="text-align: center;" |
{| border="0"
|[[Image:SkullStripperInput-3-6.png|thumb|280px|Input Image with Mask]]
|-
|[[Image:SkullStripperOutput-3-6.png|thumb|280px|Segmentation Results]]
|-
|[[Image:SkullStripperSurface-3-6.png|thumb|280px|Segmentation Results]]
|}
|}

== General Information ==
===Module Type & Category===

Type: CLI

Category: Segmentation

===Authors, Collaborators & Contact===
* Author: Xiaodong Tao
* Contact: taox at research.ge.com

===Module Description===

== Usage ==

===Examples, Use Cases & Tutorials===

===Quick Tour of Features and Use===

== Development ==

===Dependencies===

No other modules are required for this module.

===Known bugs===

None.

===Usability issues===

Developed and tested on T1 weighted images from OASIS database. In some cases, when partial volume artifact is severe, the algorithm does not find the accurate brain boundary.

===Source code & documentation===

Source Code:

XML Description:

Usage:

== More Information ==

===Acknowledgment===
This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Implementation of the Fuzzy Classification was contributed by Dr. Ming-Ching Chang from GE Research.

[http://www.oasis-brains.org/ OASIS datasets] were used to generate images on this page.

===References===

* Ming-ching Chang, Xiaodong Tao “Subvoxel Segmentation and Representation of Brain Cortex Using Fuzzy Clustering and Gradient Vector Diffusion”, SPIE Medical Imaging, San Diego, CA, 2010.

@@ Line 49: / Line 49: @@
 ===Usability issues===
-Developed and tested on T1 weighted images from OASIS database. Some limited test has been done on T2 weighted images. In some cases, when partial volume artifact is severe, the algorithm does not find the accurate brain boundary.
+Developed and tested on T1 weighted images from OASIS database. Some limited test has been done on T2 weighted images. In some cases, when partial volume artifact is severe, the algorithm does not find the accurate brain boundary. This can be used for most of visualization tasks and applications where accuracy in cortex is not critical.
 ===Source code & documentation===

@@ Line 9: / Line 9: @@
 | style="text-align: center;" |
 {| border="0"
-|[[Image:SkullStripperInput-3-6.png|thumb|280px|Input T1 Image]]
+|[[Image:SkullStripperInput-3-6.png|thumb|340px|Input T1 Image]]
 |-
-|[[Image:SkullStripperOutput-3-6.png|thumb|280px|Brain mask as contour]]
+|[[Image:SkullStripperOutput-3-6.png|thumb|340px|Brain mask as contour]]
 |}
-|[[Image:SkullStripperSurface-3-6.png|thumb|280px|Brain surface]]
+|[[Image:SkullStripperSurface-3-6.png|thumb|375px|Brain surface]]
 |}

← Older revision		Revision as of 14:52, 25 May 2010
Line 69:		Line 69:
	===References===		===References===

		+	* Xiaodong Tao, Ming-ching Chang, “A Skull Stripping Method Using Deformable Surface and Tissue Classification”, SPIE Medical Imaging, San Diego, CA, 2010.
	* Ming-ching Chang, Xiaodong Tao “Subvoxel Segmentation and Representation of Brain Cortex Using Fuzzy Clustering and Gradient Vector Diffusion”, SPIE Medical Imaging, San Diego, CA, 2010.		* Ming-ching Chang, Xiaodong Tao “Subvoxel Segmentation and Representation of Brain Cortex Using Fuzzy Clustering and Gradient Vector Diffusion”, SPIE Medical Imaging, San Diego, CA, 2010.

Modules:SkullStripperModule - Revision history

Taox: /* Usability issues */

Taox: /* Usability issues */

Taox: /* Module Name */

Taox: /* Module Name */

Taox: /* References */

Taox: Created page with 'Return to Slicer 3.6 Documentation __NOTOC__ ===Module Name=== Skull Stripper {| border="0"http://wiki.slicer.org/slicerWiki/index.php?title=Modules:Fuzzy…'

Taox: Created page with 'Return to Slicer 3.6 Documentation NOTOC ===Module Name=== Skull Stripper {| border="0"http://wiki.slicer.org/slicerWiki/index.php?title=Modules:Fuzzy…'