Modules:SPECTRE-Documentation-3.6 - Revision history

Mchen55: /* Quick Tour of Features and Use */

2011-04-19T02:13:29Z

Quick Tour of Features and Use

2011-04-19T02:13:00Z

SPECTRE

2011-04-19T02:10:07Z

Quick Tour of Features and Use

2011-04-19T01:53:17Z

SPECTRE

2011-04-19T01:52:25Z

SPECTRE

2011-04-04T20:16:40Z

Quick Tour of Features and Use

2011-04-04T20:14:58Z

Quick Tour of Features and Use

2011-04-04T19:48:58Z

Quick Tour of Features and Use

2011-04-04T19:41:57Z

Quick Tour of Features and Use

2011-04-04T19:20:37Z

Quick Tour of Features and Use

@@ Line 101: / Line 101: @@
 ** '''Second output'''
 * '''Viewing panel:'''
-|[[Image:SPECTREUserInterfaceFull_4_18_2011.png|thumb|280px|User Interface]]
+|[[Image:SPECTREUserInterfaceFull_4_18_2011.png|thumb|280px|SPECTRE User Interface (full)]]
 |}

@@ Line 8: / Line 8: @@
 {|
-|[[Image:SPECTREUserInterface_4_18_2011.png|thumb|280px|User Interface]]
+|[[Image:SPECTREUserInterface_4_18_2011.png|thumb|280px|SPECTRE User Interface]]
-|[[Image:SPECTRESplitResults_4_18_2011.png|thumb|280px|Output]]
+|[[Image:SPECTRESplitResults_4_18_2011.png|thumb|280px|Output - Brain mask split at midsagittal plane overlaid on original image.]]
-|[[Image:SPECTREStrippedResults_4_18_2011.png|thumb|280px|Caption]]
+|[[Image:SPECTREStrippedResults_4_18_2011.png|thumb|280px|Output - Skullstripped results.]]
 |}

@@ Line 101: / Line 101: @@
 ** '''Second output'''
 * '''Viewing panel:'''
-|[[Image:screenshotBlankNotOptional.png|thumb|280px|User Interface]]
+|[[Image:SPECTREUserInterfaceFull_4_18_2011.png|thumb|280px|User Interface]]
 |}

@@ Line 8: / Line 8: @@
 {|
-|[[Image:SPECTREUserInterface_4_18_2011|thumb|280px|User Interface]]
+|[[Image:SPECTREUserInterface_4_18_2011.png|thumb|280px|User Interface]]
-|[[Image:SPECTRESplitResults_4_18_2011|thumb|280px|Output]]
+|[[Image:SPECTRESplitResults_4_18_2011.png|thumb|280px|Output]]
-|[[Image:SPECTREStrippedResults_4_18_2011|thumb|280px|Caption]]
+|[[Image:SPECTREStrippedResults_4_18_2011.png|thumb|280px|Caption]]
 |}

@@ Line 8: / Line 8: @@
 {|
-|[[Image:screenshotBlankNotOptional.png|thumb|280px|User Interface]]
+|[[Image:SPECTREUserInterface_4_18_2011|thumb|280px|User Interface]]
-|[[Image:screenshotBlank.png|thumb|280px|Output]]
+|[[Image:SPECTRESplitResults_4_18_2011|thumb|280px|Output]]
-|[[Image:screenshotBlank.png|thumb|280px|Caption]]
+|[[Image:SPECTREStrippedResults_4_18_2011|thumb|280px|Caption]]
 |}

@@ Line 79: / Line 79: @@
 ** '''Output Segmentation on Plane?'''
 * '''Optimized Automated Registration panel:'''
-** '''Main'''
+** '''Main Subpanel'''
+*** '''Degres of freedom'''
-Degres of freedom
+*** '''Cost Function'''
-Cost Function
+*** '''Registration Interpolation'''
-REgistration Interpolation
+*** '''Output Interpolation'''
-Output Interpolation
+*** '''Apply Rotation'''
-apply roatation
+*** '''Minimum Angle'''
-Minimum angle
+*** '''Maximum Angle '''
-Maximum angle
+*** '''Coarse Angle Increment'''
-Coarse Angle Increment
+*** '''Fine Angle Increment'''
-Fine Angle Increment
+** '''Advanced Subpanel'''
-** '''Second parameter'''
+*** '''Multiple of Tolerance to Bracket the Minimum'''
-Multiple of Tolerance to Bracket the Minimum
+*** '''Number of Iterations'''
-Number of Iterations
+*** '''Number of Minima From Level 8 to test at Level 4'''
-Number of Minima From Level 8 to test at Level 4
+*** '''Use the Max of the Min Resolutions of the Two Datasets when Resampling'''
-Use the Max of the Min Resolutions of the Two Datasets when REsampling
+*** '''Subsample Image for Speed'''
-Subsample Image for Speed
+*** '''Skip Multilevel Search (Assume Images are Close to Alignment)'''
-Skip Multilevel Search (Assume Images are close to alignment)
+*** '''Multithreading for Registration'''
 * '''Output panel:'''
 ** '''First output'''

@@ Line 70: / Line 70: @@
 ** '''MMC Dilation Distance'''
 ** '''MMC Erosion Distance'''
 * '''MSP panel:'''
-** '''First parameter'''
+** '''Output Plane?'''
-** '''Second parameter'''
+** '''Output Split-Halves?'''
 * '''Optimized Automated Registration panel:'''
 ** '''First parameter'''

@@ Line 62: / Line 62: @@
 ** '''Image Modality'''
 ** '''Output in Original Image Space'''
 * '''Advanced panel:'''
-** '''First parameter'''
+** '''Run Smooth Brain Mask'''
-** '''Second parameter'''
+** '''Resample Data to Isotropic Voxels'''
 * '''MSP panel:'''
 ** '''First parameter'''

@@ Line 56: / Line 56: @@
 {|
+|
-* '''Input panel: Main'''
+* '''Main Panel:'''
-** '''First input'''
+** '''Input volume'''
-** '''Second input'''
+** '''Atlas List'''
-* '''Parameters panel:'''
+** '''Initial Erosion distance'''
 ** '''First parameter'''
 ** '''Second parameter'''