Modules:ResampleVolumeBatch-Documentation-3.6 - Revision history

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Usage

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Module Description

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[[Documentation-3.6|Return to Slicer 3.6 Documentation]]
__NOTOC__
===Module Name===
Resample Scalar Volume BatchMake
{|
|[[Image:ResampleVolumeBatchMakeModule.png|thumb|580px|Resample Scalar Volume BatchMake GUI]]
|}

== General Information ==
===Module Type & Category===

Type: CLI

Category: Filtering

===Authors, Collaborators & Contact===
* Author: Stephen Aylward and Julien Finet at Kitware Inc.
* Contact: stephen.aylward at kitware.com

===Module Description===

This module is the BatchMake version of the [http://wiki.slicer.org/slicerWiki/index.php/Modules:ResampleVolume-Documentation-3.6 Resample Scalar Volume module]. It can resample automatically every file in a the input directory with a specified scaling.
See the [http://wiki.slicer.org/slicerWiki/index.php/Modules:ResampleVolume-Documentation-3.6 Resample Volume documentation] for more information.

== Usage ==
Input volume volume= directory where the input images are located<br>
Directory mask = Images to resample must match the directory mask to be processed by the module<br>
Output volume directory = directory where to save the output <br>
Output volume suffix = name to give to the output files. To ensure uniqueness of the name, the BatchMake variable ${InputVolume} contains the name of each moving image.

===Examples, Use Cases & Tutorials===

* Use to resample volumes

===Quick Tour of Features and Use===

== Development ==

===Dependencies===

[http://wiki.slicer.org/slicerWiki/index.php/Modules:ResampleVolume-Documentation-3.6 Resample Volume module]

===Known bugs===
Don't use space character in paths
Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker.

===Usability issues===

Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker. Please select the '''usability issue category''' when browsing or contributing.

===Source code & documentation===

Source Code: [http://viewvc.slicer.org/viewcvs.cgi/trunk/Applications/CLI/BatchMakeApplications/GenericBatchMakeModule/BatchMakeModule.cxx BatchMakeModule.cxx]

XML Description: [http://viewvc.slicer.org/viewcvs.cgi/trunk/Applications/CLI/BatchMakeApplications/ResampleVolumeBatchMakeModule/ResampleVolumeBatchMakeModule.xml ResampleVolumeBatchMakeModule.xml]

Documentation: [http://batchmake.org/Wiki/Batchmake_slicer batchmake.org]

== More Information ==

===Acknowledgment===
This work is part of the National Alliance for Medical Image
Computing (NAMIC), funded by the National Institutes of Health
through the NIH Roadmap for Medical Research, Grant U54 EB005149.
Information on the National Centers for Biomedical Computing
can be obtained from [http://www.ncbcs.org/ National Centers for Biomedical Computing].

===References===

← Older revision		Revision as of 13:16, 10 May 2010
Line 21:		Line 21:

	This module is the BatchMake version of the [http://wiki.slicer.org/slicerWiki/index.php/Modules:ResampleVolume-Documentation-3.6 Resample Scalar Volume module]. It can resample automatically every file in a the input directory with a specified scaling.		This module is the BatchMake version of the [http://wiki.slicer.org/slicerWiki/index.php/Modules:ResampleVolume-Documentation-3.6 Resample Scalar Volume module]. It can resample automatically every file in a the input directory with a specified scaling.
		+
		+	Resampling an image is an important task in image analysis. It is especially important in the frame of image registration. This module implements image resampling through the use of itk Transforms. This module uses an Identity Transform. The resampling is controlled by the Output Spacing. 'Resampling' is performed in space coordinates, not pixel/grid coordinates. It is quite important to ensure that image spacing is properly set on the images involved. The interpolator is required since the mapping from one space to the other will often require evaluation of the intensity of the image at non-grid positions. Several interpolators are available: linear, nearest neighbor and five flavors of sinc. The sinc interpolators, although more precise, are much slower than the linear and nearest neighbor interpolator. To resample label volumnes, nearest neighbor interpolation should be used exclusively.
		+
	See the [http://wiki.slicer.org/slicerWiki/index.php/Modules:ResampleVolume-Documentation-3.6 Resample Volume documentation] for more information.		See the [http://wiki.slicer.org/slicerWiki/index.php/Modules:ResampleVolume-Documentation-3.6 Resample Volume documentation] for more information.

@@ Line 20: / Line 20: @@
 ===Module Description===
-This module is the BatchMake version of the [http://wiki.slicer.org/slicerWiki/index.php/Modules:ResampleVolume-Documentation-3.6 Resample Scalar Volume module]. It can resample automatically every file in a the input directory with a specified scaling.
+This module is the BatchMake version of the [[Modules:ResampleVolume-Documentation-3.6|Resample Scalar Volume module]]. It can resample automatically every file in a the input directory with a specified scaling.
 Resampling an image is an important task in image analysis. It is especially important in the frame of image registration. This module implements image resampling through the use of itk Transforms. This module uses an Identity Transform. The resampling is controlled by the Output Spacing. 'Resampling' is performed in space coordinates, not pixel/grid coordinates. It is quite important to ensure that image spacing is properly set on the images involved. The interpolator is required since the mapping from one space to the other will often require evaluation of the intensity of the image at non-grid positions. Several interpolators are available: linear, nearest neighbor and five flavors of sinc. The sinc interpolators, although more precise, are much slower than the linear and nearest neighbor interpolator. To resample label volumnes, nearest neighbor interpolation should be used exclusively.
-See the [http://wiki.slicer.org/slicerWiki/index.php/Modules:ResampleVolume-Documentation-3.6 Resample Volume documentation] for more information.
+See the [[Modules:ResampleVolume-Documentation-3.6|Resample Volume documentation]] for more information.
 == Usage ==
@@ Line 53: / Line 53: @@
 ===Dependencies===
-[http://wiki.slicer.org/slicerWiki/index.php/Modules:ResampleVolume-Documentation-3.6 Resample Volume module]
+[[Modules:ResampleVolume-Documentation-3.6|Resample Volume module]]
 ===Known bugs===

@@ Line 31: / Line 31: @@
 Output volume directory = directory where to save the output <br>
 Output volume suffix = name to give to the output files. To ensure uniqueness of the name, the BatchMake variable ${InputVolume} contains the name of each moving image.
 ===Examples, Use Cases & Tutorials===
 * Use to resample volumes
 ===Quick Tour of Features and Use===
 == Development ==