Modules:ResampleVolume-Documentation-3.4 - Revision history

Marianna at 20:12, 26 May 2009

2009-05-26T20:12:26Z

Kikinis: /* Module Description */

2009-04-04T21:25:45Z

Module Description

Lorensen at 17:51, 16 February 2009

2009-02-16T17:51:35Z

Lorensen at 17:13, 16 February 2009

2009-02-16T17:13:29Z

Lorensen: /* Source code & documentation */

2009-02-07T18:15:31Z

Source code & documentation

Lorensen: /* Module Description */

2009-02-07T18:12:17Z

Module Description

Lorensen: /* Module Type & Category */

2009-02-07T18:11:55Z

Module Type & Category

Lorensen: /* Module Name */

2009-02-07T18:10:51Z

Module Name

Lorensen: New page: Return to Slicer 3.4 Documentation NOTOC ===Module Name=== MyModule {| |Caption 1 |[[Image:screenshotBlank.png|thumb|2...

2009-02-07T16:14:37Z

New page: Return to Slicer 3.4 Documentation __NOTOC__ ===Module Name=== MyModule {| |thumb|280px|Caption 1 |[[Image:screenshotBlank.png|thumb|2...

New page

[[Documentation-3.4|Return to Slicer 3.4 Documentation]]
__NOTOC__
===Module Name===
MyModule

{|
|[[Image:screenshotBlank.png|thumb|280px|Caption 1]]
|[[Image:screenshotBlank.png|thumb|280px|Caption 2]]
|[[Image:screenshotBlank.png|thumb|280px|Caption 3]]
|}

== General Information ==
===Module Type & Category===

Type: CLI

Category: Base or (Filtering, Registration, ''etc.'')

===Authors, Collaborators & Contact===
* Author: Bill Lorensen
* Contact: bill.lorensen at gmail.com

===Module Description===
Overview of what the module does goes here.

== Usage ==

===Examples, Use Cases & Tutorials===

* Note use cases for which this module is especially appropriate, and/or link to examples.
* Link to examples of the module's use
* Link to any existing tutorials

===Quick Tour of Features and Use===
List all the panels in your interface, their features, what they mean, and how to use them. For instance:

* '''Input panel:'''
* '''Parameters panel:'''
* '''Output panel:'''
* '''Viewing panel:'''

== Development ==

===Dependencies===

Other modules or packages that are required for this module's use.

===Known bugs===

Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker.

===Usability issues===

Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker. Please select the '''usability issue category''' when browsing or contributing.

===Source code & documentation===

Source Code: [http://www.na-mic.org/ViewVC/index.cgi/trunk/Applications/CLI/]

Documentation:

== More Information ==

===Acknowledgment===
This work is part of the National Alliance for Medical Image
Computing (NAMIC), funded by the National Institutes of Health
through the NIH Roadmap for Medical Research, Grant U54 EB005149.
Information on the National Centers for Biomedical Computing
can be obtained from [http://www.ncbcs.org/ National Centers for Biomedical Computing].

===References===

@@ Line 22: / Line 22: @@
 ===Module Description===
-Resampling an image is an important task in image
+Resampling an image is an important task in image analysis.
-analysis.It is especially important in the frame of image registration.
+It is especially important in the frame of image registration.
 This module implements image resampling through the use of itk
 Transforms. This module uses an Identity Transform. The resampling is
@@ Line 36: / Line 36: @@
 resample label volumnes, nearest neighbor interpolation should be used
 exclusively.
 == Usage ==

← Older revision		Revision as of 17:51, 16 February 2009
Line 152:		Line 152:

	===References===		===References===
		+
		+	Erik H. W. Meijering, Wiro J. Niessen, Josien P. W. Pluim, Max A. Viergever: ''Quantitative Comparison of Sinc-Approximating Kernels for Medical Image Interpolation''. MICCAI 1999, pp. 210-217.[http://www.imagescience.org/meijering/publications/download/miccai1999.pdf (pdf)]

@@ Line 22: / Line 22: @@
 ===Module Description===
-Resampling an image is a very important task in image
+Resampling an image is an important task in image
 analysis.It is especially important in the frame of image registration.
 This module implements image resampling through the use of itk
@@ Line 31: / Line 31: @@
 interpolator is required since the mapping from one space to the other
 will often require evaluation of the intensity of the image at non-grid
-positions. Two interpolators are avaliable: linear and sinc. The sinc
+positions. Several interpolators are available: linear, nearest neighbor
-interpolator, although more precise, is much slower than the liner
+and five flavors of sinc. The sinc interpolators, although more precise,
-interpolator.
+are much slower than the linear and nearest neighbor interpolator. To
 == Usage ==
@@ Line 74: / Line 77: @@
 Usage:
 <pre>
-./ResampleVolume  [--processinformationaddress <std::string>] [--xml]
+ResampleVolume  [--processinformationaddress
-                  [--echo] [-i <linear|sinc>] [-s <std::vector<float>>]
+                <std::string>] [--xml] [--echo] [-i
-                  [--] [--version] [-h] <std::string> <std::string>
+                <linear|nearestNeighbor|hamming
+                |cosine|welch|lanczos|blackman>]
+                [-s <std::vector<float>>] [--]
 Where:
---processinformationaddress <std::string>
+   --xml
-  Address of a structure to store process information (progress, abort,
+     Produce xml description of command line arguments (default: 0)
---xml
+   --echo
-  Produce xml description of command line arguments (default: 0)
+     Echo the command line arguments (default: 0)
---echo
+   -i <linear|nearestNeighbor|hamming|cosine|welch|lanczos|blackman>,
-  Echo the command line arguments (default: 0)
+      --interpolation <linear|nearestNeighbor|hamming|cosine|welch|lanczos
--i <linear|sinc>,  --interpolation <linear|sinc>
+   -s <std::vector<float>>,  --spacing <std::vector<float>>
-  Sampling algorithm (linear or sinc) (default: linear)
+     Spacing along each dimension (0 means use input spacing) (default: 0,0
--s <std::vector<float>>,  --spacing <std::vector<float>>
+   --,  --ignore_rest
-  Spacing along each dimension (0 means use input spacing) (default: 0,0
+     Ignores the rest of the labeled arguments following this flag.
---,  --ignore_rest
+   --version
-  Ignores the rest of the labeled arguments following this flag.
+     Displays version information and exits.
---version
+   -h,  --help
-  Displays version information and exits.
+     Displays usage information and exits.
--h,  --help
+   <std::string>
-  Displays usage information and exits.
+     (required)  Input volume to be resampled
-<std::string>
+   <std::string>
-  (required)  Input volume to be resampled
+     (required)  Resampled Volume
-Author(s): Bill Lorensen
+   Description: Resampling an image is an important task in image
 </pre>

@@ Line 1: / Line 1: @@
 [[Documentation-3.4|Return to Slicer 3.4 Documentation]]
 __NOTOC__
 ===Module Name===

@@ Line 68: / Line 68: @@
 ===Source code & documentation===
-Source Code: [http://www.na-mic.org/ViewVC/index.cgi/trunk/Applications/CLI/]
+Source Code: [http://www.na-mic.org/ViewVC/index.cgi/trunk/Applications/CLI/ResampleVolume.cxx?view=annotate ResampleVolume.cxx]
-Documentation:
+XML Description: [http://www.na-mic.org/ViewVC/index.cgi/trunk/Applications/CLI/ResampleVolume.xml?view=co ResampleVolume.xml]
 == More Information ==

@@ Line 15: / Line 15: @@
 Type: CLI
-Category: Base or (Filtering, Registration, ''etc.'')
+Category: Filtering
 ===Authors, Collaborators & Contact===