Modules:QDECModule-Documentation-3.4 - Revision history

Nicole: /* Source code & documentation */

2010-01-15T21:52:59Z

Source code & documentation

Marianna at 19:55, 26 May 2009

2009-05-26T19:55:31Z

Nicole: /* Panels */

2009-03-05T23:16:46Z

Panels

Nicole: /* Panels */

2009-03-05T23:15:50Z

Panels

Nicole: /* Panels */

2009-03-05T23:13:52Z

Panels

Nicole: /* Quick Tour of Features and Use */

2009-03-05T23:13:16Z

Quick Tour of Features and Use

Nicole: /* Subject scans */

2009-03-05T23:12:49Z

Subject scans

Nicole: /* Subject scans */

2009-03-05T23:12:08Z

Subject scans

Nicole: /* Subject scans */

2009-03-05T23:10:48Z

Subject scans

Nicole: /* Subject scans */

2009-03-05T23:10:08Z

Subject scans

@@ Line 172: / Line 172: @@
 Module Doxygen documentation:
-*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classvtkQdecModuleGUI.html GUI]
+*[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classvtkQdecModuleGUI.html GUI]
-*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classvtkQdecModuleLogic.html Logic]
+*[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classvtkQdecModuleLogic.html Logic]
-*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classvtkGDFReader.html GDF Reader]
+*[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classvtkGDFReader.html GDF Reader]
 Library Doxygen documentation:
-*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecGlmDesign.html GLM Design]
+*[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classQdecGlmDesign.html GLM Design]
-*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecGlmFit.html GLM Fit]
+*[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classQdecGlmFit.html GLM Fit]
-*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecFactor.html Factor]
+*[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classQdecFactor.html Factor]
-*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecDataTable.html Data Table]
+*[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classQdecDataTable.html Data Table]
-*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecContrast.html Contrast]
+*[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classQdecContrast.html Contrast]
-*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecGlmFitResults.html GLM Fit Results]
+*[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classQdecGlmFitResults.html GLM Fit Results]
-*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecProject.html Project]
+*[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classQdecProject.html Project]
-*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecSubject.html Subject]
+*[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classQdecSubject.html Subject]
-*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecUtilities.html Utilities]
+*[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classQdecUtilities.html Utilities]
 == More Information ==

@@ Line 1: / Line 1: @@
 [[Documentation-3.4|Return to Slicer 3.4 Documentation]]
 __NOTOC__
 ===QDEC===

@@ Line 131: / Line 131: @@
 |}
-Once the average brain surface and statistical overlays are loaded into Slicer3, you can use the QueryAtlas module to load the brain region labels and browse the annotations.
+Once the average brain surface and statistical overlays are loaded into Slicer3, you can use the [http://wiki.slicer.org/slicerWiki/index.php?title=Modules:QueryAtlas-Documentation-3.4 QueryAtlas module] to load the brain region labels and browse the annotations.
 == Development ==

@@ Line 116: / Line 116: @@
 |-
 | Run GLM Fit
-| Find the glm executable from the FreeSurfer installation and run it with the selected factors and measures.
+| On machines that have a FreeSurfer binary installation, you can use Slicer3 to set up queries and launch the mri_glmfit executable with the selected factors and measures. Slicer3 will automatically load the processing results for inspection.
 |}
 * '''Display panel:'''
@@ Line 129: / Line 130: @@
 | Pick which overlay is represented on the average brain, the overlays are generated in response to the question that was posed by the measures, for example, does the average thickness differ from zero? Selecting a new overlay also resets the colour node used to map the scalars on the model. You can manually select an overlay and color node in the Models Display panel if you wish.
 |}
 == Development ==

← Older revision		Revision as of 23:13, 5 March 2009
Line 120:		Line 120:
	* '''Display panel:'''		* '''Display panel:'''

		+	You can inspect all the statistical results of the analysis by switching to different overlays using the “Questions” menu.

	{\| border="1"		{\| border="1"

@@ Line 69: / Line 69: @@
 Once the results are loaded, the first point in the average brain is used to pop up a plot of all the subject values at that vertex. You can plot results at various vertices by setting the setting the 3DViewer mouse mode to 'pick' using the toolbar button and clicking on the brain model. The plot window shows the RAS and index of the chosen vertex.
-[[Image:SlicerQDECPlot-3.4.jpg|thumb|280px|QDEC Plot window]]
+[[Image:SlicerQDECPlot-3.4.jpg]]
 ====Panels====

← Older revision		Revision as of 23:12, 5 March 2009
Line 68:		Line 68:

	Once the results are loaded, the first point in the average brain is used to pop up a plot of all the subject values at that vertex. You can plot results at various vertices by setting the setting the 3DViewer mouse mode to 'pick' using the toolbar button and clicking on the brain model. The plot window shows the RAS and index of the chosen vertex.		Once the results are loaded, the first point in the average brain is used to pop up a plot of all the subject values at that vertex. You can plot results at various vertices by setting the setting the 3DViewer mouse mode to 'pick' using the toolbar button and clicking on the brain model. The plot window shows the RAS and index of the chosen vertex.
		+
	[[Image:SlicerQDECPlot-3.4.jpg\|thumb\|280px\|QDEC Plot window]]		[[Image:SlicerQDECPlot-3.4.jpg\|thumb\|280px\|QDEC Plot window]]

@@ Line 67: / Line 67: @@
 * Volume holding data for each subject
-Once the results are loaded, you can plot results at various vertices by setting the setting the 3DViewer mouse mode to 'pick' using the toolbar button.
+Once the results are loaded, the first point in the average brain is used to pop up a plot of all the subject values at that vertex. You can plot results at various vertices by setting the setting the 3DViewer mouse mode to 'pick' using the toolbar button and clicking on the brain model.
 ====Panels====