Modules:PlastimatchLANDWARP - Revision history

NadyaSh at 23:16, 14 February 2011

2011-02-14T23:16:28Z

NadyaSh at 23:07, 14 February 2011

2011-02-14T23:07:24Z

NadyaSh at 22:53, 14 February 2011

2011-02-14T22:53:09Z

NadyaSh at 22:51, 14 February 2011

2011-02-14T22:51:42Z

NadyaSh at 22:51, 14 February 2011

2011-02-14T22:51:12Z

NadyaSh at 22:36, 14 February 2011

2011-02-14T22:36:47Z

NadyaSh at 22:35, 14 February 2011

2011-02-14T22:35:30Z

NadyaSh at 22:34, 14 February 2011

2011-02-14T22:34:38Z

NadyaSh at 22:19, 14 February 2011

2011-02-14T22:19:56Z

NadyaSh at 22:11, 14 February 2011

2011-02-14T22:11:58Z

@@ Line 39: / Line 39: @@
 {|
 |[[Image:3D_Slicer_Plastimatch_Landmark_Registration_Tutorial.png|thumb|280px|[http://forge.abcd.harvard.edu/gf/download/frsrelease/110/1622/3D_Slicer_Plastimatch_Landmark_Registration_Tutorial.ppt Download tutorial]]]
-|[[Image:plastimatch_tutorial_data.png|thumb|230px|[http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1619/synthetic_img.zip Download tutorial data]]]
+|[[Image:fixed.png|thumb|230px|[http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1619/synthetic_img.zip Download tutorial data]]]
 |}

@@ Line 5: / Line 5: @@
 {|
-|[[Image:plastimatch_image_1.png|thumb|280px|Before Registration]]
+|[[Image:before_reg.png|thumb|280px|Before Registration]]
-|[[Image:plastimatch_image_2.png|thumb|280px|After Registration]]
+|[[Image:after_reg.png|thumb|280px|After Registration]]
 |}

@@ Line 53: / Line 53: @@
 ** '''Basis function:''' Here you can choose either tps (thin plate splines), or gauss (Gaussian RBF), or wendland (Wendland RBF).
 ** '''RBF radius:''' Here you can choose the radius of RBF.
 ** '''Stiffness:''' Here you can choose the regularization parameter.
 ** '''Default Pixel Value:''' Here you can choose the value for pixels with unknown value.
-|[[Image:plastimatch_landmark_gui.png|thumb|380px|User Interface]]
+|[[Image:plastimatch_landmark_gui.png|thumb|280px|User Interface]]
 |}

@@ Line 55: / Line 55: @@
 ** '''Stiffness:''' Here you can choose the regularization parameter.
 ** '''Default Pixel Value:''' Here you can choose the value for pixels with unknown value.
-|[[Image:plastimatch_bspline_gui.png|thumb|380px|User Interface]]
+|[[Image:plastimatch_landmark_gui.png|thumb|380px|User Interface]]
 |}

@@ Line 55: / Line 55: @@
 ** '''Stiffness:''' Here you can choose the regularization parameter.
 ** '''Default Pixel Value:''' Here you can choose the value for pixels with unknown value.
 == Development ==

@@ Line 51: / Line 51: @@
 ** '''Moving Volume:''' Here you choose the "moving image", which will be warped to match the fixed image.
 ** '''Output Volume:''' Here you choose where to put the warped image.  You can replace an existing image in the scene, or create a new image.
-** '''Cost Function:''' Here you can choose either Mean-squared error (MSE) for unimodal registration, or Mutual Information (MI) for multimodal registration.
+** '''Basis function:''' Here you can choose either tps (thin plate splines), or gauss (Gaussian RBF), or wendland (Wendland RBF).
-** '''Hardware:''' Here you can choose either GPU for CUDA-accelerated registration, or CPU for multicore-accelerated registration.
+** '''RBF radius:''' Here you can choose the radius of RBF.
-* '''Stage 0 panel:''' Stage 0 is the a pre-alignment stage, which uses either a translation, rigid transform, or affine transform to make a rough alignment of the moving image to the fixed image.  The default is not to do pre-alignment.  If your images are reasonably well aligned you can keep this option off, which makes plastimatch run faster.  But generally it doesn't hurt to enable Stage 0.
+** '''Stiffness:''' Here you can choose the regularization coefficient.
-** '''Enable Stage 0:'''  Click on this checkbox to enable the pre-alignment stage.
+* '''Default Pixel Value:''' Here you can choose the value for pixels with unknown value.
 == Development ==
@@ Line 85: / Line 70: @@
 ===Known bugs===
 ===Usability issues===
@@ Line 134: / Line 117: @@
 ===References===
 * G Sharp et al. "Plastimatch - An open source software suite for radiotherapy image processing," Proceedings of the XVIth International Conference on the use of Computers in Radiotherapy, May, 2010.

@@ Line 38: / Line 38: @@
 {|
-|[[Image:3D_Slicer_Plastimatch_Landmark_Registration_Tutorial.png|thumb|280px|[http://forge.abcd.harvard.edu/gf/download/frsrelease/110/1622/3D_Slicer_Plastimatch_landmark_Registration_Tutorial.ppt Download tutorial]]]
+|[[Image:3D_Slicer_Plastimatch_Landmark_Registration_Tutorial.png|thumb|280px|[http://forge.abcd.harvard.edu/gf/download/frsrelease/110/1622/3D_Slicer_Plastimatch_Landmark_Registration_Tutorial.ppt Download tutorial]]]
 |[[Image:plastimatch_tutorial_data.png|thumb|230px|[http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1004/rider-lung-images.tar.gz Download tutorial data]]]
 |}