Modules:N4ITKBiasFieldCorrection-Documentation-3.6 - Revision history

Fedorov: /* Module Description */

2010-10-20T13:34:23Z

Module Description

2010-07-10T19:46:03Z

References

2010-07-10T19:45:48Z

References

2010-07-10T19:45:33Z

References

2010-07-10T19:44:36Z

Quick Tour of Features and Use

2010-05-05T15:13:13Z

Module Type & Category

2010-04-28T22:51:38Z

Tutorials

2010-04-28T22:48:13Z

Use Cases, Examples

2010-04-28T22:43:29Z

N4ITK Bias field correction

2010-04-28T21:21:49Z

Notes from the Developer(s)

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 ===Module Description===
-This module is a CLI wrapper around the N4 bias field correction algorithm, which was presented by Nick Tustison in [http://hdl.handle.net/10380/3053 this Insight Journal publication]. This module can be used to remove field inhomogeneity artifact from the image.
+This module is a CLI wrapper around the N4 bias field correction algorithm, which was presented by Nick Tustison in [http://hdl.handle.net/10380/3053 this Insight Journal publication]. This module can be used to remove field inhomogeneity artifact from the image. The module is based on the version 9 of the Insight Journal contribution, with minor changes to the processing filters to track execution progress and to fix some minor issues.
 == Usage ==

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 * Tustison N, Avants B, Cook P, Gee J ''N4ITK: Improved N3 Bias Correction with Robust B-Spline Approximation'', Proc. of ISBI'10, 2010
 * Tustison NJ, Avants BB, Cook PA, Zheng Y, Egan A, Yushkevich PA, Gee JC '' N4ITK: Improved N3 Bias Correction'', IEEE Trans Med Imag, 2010 [http://dx.doi.org/10.1109/TMI.2010.2046908 link]
-* Boyes RG, Gunter JL, Frost C, Janke AL, Yeatman T, Hill DL, Bernstein MA, Thompson PM, Weiner MW, Schuff N, Alexander GE, Killiany RJ, DeCarli C, Jack CR, Fox NC (2008) ''Intensity non-uniformity correction using N3 on 3-T scanners with multichannel phased array coils''. NeuroImage 39:1752-62 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2562663&tool=pmcentrez&rendertype=abstract].
+* Boyes RG, Gunter JL, Frost C, Janke AL, Yeatman T, Hill DL, Bernstein MA, Thompson PM, Weiner MW, Schuff N, Alexander GE, Killiany RJ, DeCarli C, Jack CR, Fox NC (2008) ''Intensity non-uniformity correction using N3 on 3-T scanners with multichannel phased array coils''. NeuroImage 39:1752-62 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2562663&tool=pmcentrez&rendertype=abstract link].

@@ Line 148: / Line 148: @@
 * Tustison N, Avants B, Cook P, Gee J ''N4ITK: Improved N3 Bias Correction with Robust B-Spline Approximation'', Proc. of ISBI'10, 2010
 * Tustison NJ, Avants BB, Cook PA, Zheng Y, Egan A, Yushkevich PA, Gee JC '' N4ITK: Improved N3 Bias Correction'', IEEE Trans Med Imag, 2010 [http://dx.doi.org/10.1109/TMI.2010.2046908 link]
-* Boyes RG, Gunter JL, Frost C, Janke AL, Yeatman T, Hill DL, Bernstein MA, Thompson PM, Weiner MW, Schuff N, Alexander GE, Killiany RJ, DeCarli C, Jack CR, Fox NC (2008) '''Intensity non-uniformity correction using N3 on 3-T scanners with multichannel phased array coils'''. NeuroImage 39:1752-62 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2562663&tool=pmcentrez&rendertype=abstract].
+* Boyes RG, Gunter JL, Frost C, Janke AL, Yeatman T, Hill DL, Bernstein MA, Thompson PM, Weiner MW, Schuff N, Alexander GE, Killiany RJ, DeCarli C, Jack CR, Fox NC (2008) ''Intensity non-uniformity correction using N3 on 3-T scanners with multichannel phased array coils''. NeuroImage 39:1752-62 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2562663&tool=pmcentrez&rendertype=abstract].

← Older revision		Revision as of 19:45, 10 July 2010
Line 148:		Line 148:
	* Tustison N, Avants B, Cook P, Gee J ''N4ITK: Improved N3 Bias Correction with Robust B-Spline Approximation'', Proc. of ISBI'10, 2010		* Tustison N, Avants B, Cook P, Gee J ''N4ITK: Improved N3 Bias Correction with Robust B-Spline Approximation'', Proc. of ISBI'10, 2010
	* Tustison NJ, Avants BB, Cook PA, Zheng Y, Egan A, Yushkevich PA, Gee JC '' N4ITK: Improved N3 Bias Correction'', IEEE Trans Med Imag, 2010 [http://dx.doi.org/10.1109/TMI.2010.2046908 link]		* Tustison NJ, Avants BB, Cook PA, Zheng Y, Egan A, Yushkevich PA, Gee JC '' N4ITK: Improved N3 Bias Correction'', IEEE Trans Med Imag, 2010 [http://dx.doi.org/10.1109/TMI.2010.2046908 link]
		+	* Boyes RG, Gunter JL, Frost C, Janke AL, Yeatman T, Hill DL, Bernstein MA, Thompson PM, Weiner MW, Schuff N, Alexander GE, Killiany RJ, DeCarli C, Jack CR, Fox NC (2008) '''Intensity non-uniformity correction using N3 on 3-T scanners with multichannel phased array coils'''. NeuroImage 39:1752-62 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2562663&tool=pmcentrez&rendertype=abstract].

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 |[[Image:n4_controls.png|thumb|280px|User Interface]]
 |}
 == Development ==

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 Type: CLI
-Category: Filtering (Experimental)
+Category: Filtering
 ===Authors, Collaborators & Contact===

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 |[[Image:n4_he_input.png|thumb|280px|Slice of the input test volume with apparent bias field and label outlines]]
 |[[Image:n4_he_output.png|thumb|280px|Output image visually contains less inhomogeneity]]
 |[[Image:n4_he_bias.png|thumb|280px|Recovered bias field (zoom in to see the actual value in the background image)]]
 |}

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 |[[Image:n4_mark1_input.png|thumb|280px|Slice of the input test volume with apparent bias field and label outlines]]
 |[[Image:n4_mark1_output.png|thumb|280px|Output image visually contains less inhomogeneity]]
 |[[Image:n4_mark1_bias.png|thumb|280px|Recovered bias field]]
 |}

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 |[[Image:n4_prostate_input_ax.png|thumb|280px|Prostate erMRI]]
 |[[Image:n4_prostate_output_ax.png|thumb|280px|After bias correction]]
 |[[Image:n4_prostate_bias_ax.png|thumb|280px|Recovered bias field]]
 |}

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 Slicer3/Scripts/getbuildtest.tcl --release --clean
 </pre>
 ===Dependencies===