https://www.slicer.org/w/index.php?action=history&feed=atom&title=Modules%3AModelIntoLabelVolume-Documentation 2026-05-08T05:20:58Z Revision history for this page on the wiki MediaWiki 1.33.0 https://www.slicer.org/w/index.php?title=Modules:ModelIntoLabelVolume-Documentation&diff=7560&oldid=prev 2009-01-27T20:45:02Z

<p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 20:45, 27 January 2009</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:ModelInLabelVolume.jpg]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:ModelInLabelVolume.jpg]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>This module intersects a surface model with a reference volume and produces a new label map volume with voxels set to a label value specified by the user. This is useful when you wish to produce a label volume from an FA volume and tracts that have been seeded from it.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>This module intersects a surface model with a reference volume and produces a new label map volume with voxels set to a label value specified by the user. This is useful when you wish to produce a label volume from an FA volume and tracts that have been seeded from it. <ins class="diffchange diffchange-inline">Only the outline of the model will be seen in the resulting label map, as the intersection is done at the vertices of the model.</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">== GUI ==</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*'''Settings'''</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*'''Settings'''</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l9" >Line 9:</td> <td colspan="2" class="diff-lineno">Line 12:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Label Volume Name''': what to name the output label volume. If set to an empty string, defaults to ModelName-VolumeName.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Label Volume Name''': what to name the output label volume. If set to an empty string, defaults to ModelName-VolumeName.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Use Intensity''': A flag (default off) that when selected will cause the output label map volume to have the voxel values from the reference volume at intersection points. This will create a very colourful label map, but the volume can then be saved and reloaded as a grey scale volume.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Use Intensity''': A flag (default off) that when selected will cause the output label map volume to have the voxel values from the reference volume at intersection points. This will create a very colourful label map, but the volume can then be saved and reloaded as a grey scale volume.</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>**'''Subdivide Model''': A flag (default off) that when set will subdivide the input model so that it has more vertices, using the vtkButterflySubdivisionFilter.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>**'''Subdivide Model''': A flag (default off) that when set will subdivide the input model so that it has more vertices, using the vtkButterflySubdivisionFilter<ins class="diffchange diffchange-inline">. A new model is created and added to the scene, with the name ModelName-Subdivided</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">== Trouble Shooting ==</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">If you see a sparsely marked up label volume, use the '''Subdivide Model''' flag to increase the number of vertices in the model before it's mapped into the volume.</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">== Details ==</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">Uses the RAS to IJK matrix from the reference volume to transform the model vertices into IJK space and then calls FindPoint on the image data in the label volume to get the point ID where the label value should be set</ins>.</div></td></tr> <!-- diff cache key mediawiki_slicer:diff::1.12:old-7559:rev-7560 --> </table>

Nicole https://www.slicer.org/w/index.php?title=Modules:ModelIntoLabelVolume-Documentation&diff=7559&oldid=prev 2009-01-27T20:39:02Z

<p>New page: <a href="/wiki/File:ModelInLabelVolume.jpg" title="File:ModelInLabelVolume.jpg">Image:ModelInLabelVolume.jpg</a> This module intersects a surface model with a reference volume and produces a new label map volume with voxels set to a label value specified by the user....</p> <p><b>New page</b></p><div>[[Image:ModelInLabelVolume.jpg]]<br /> <br /> This module intersects a surface model with a reference volume and produces a new label map volume with voxels set to a label value specified by the user. This is useful when you wish to produce a label volume from an FA volume and tracts that have been seeded from it.<br /> <br /> *'''Settings'''<br /> **'''Model''': pick a model from the scene.<br /> **'''Reference Volume''': pick a reference volume from the scene. The volume will be used as a basis for the new label map volume, created using the Volumes module's Logic method, CreateLabelVolume.<br /> **'''Label Value''': the integer value to place at the voxels in the output label volume where the model vertices are found.<br /> **'''Label Volume Name''': what to name the output label volume. If set to an empty string, defaults to ModelName-VolumeName.<br /> **'''Use Intensity''': A flag (default off) that when selected will cause the output label map volume to have the voxel values from the reference volume at intersection points. This will create a very colourful label map, but the volume can then be saved and reloaded as a grey scale volume.<br /> **'''Subdivide Model''': A flag (default off) that when set will subdivide the input model so that it has more vertices, using the vtkButterflySubdivisionFilter.</div>

Nicole