Modules:MaskImage-Documentation-3.5 - Revision history

Meier at 17:52, 28 January 2010

2010-01-28T17:52:05Z

Meier: moved Modules:MaskImage-Documentation-3.4 to Modules:MaskImage-Documentation-3.5

2010-01-28T17:50:57Z

moved Modules:MaskImage-Documentation-3.4 to Modules:MaskImage-Documentation-3.5

Meier: /* Dependencies */

2010-01-28T17:24:33Z

Dependencies

Meier: /* Mask Image */

2010-01-28T17:20:45Z

Mask Image

Meier: /* Quick Tour of Features and Use */

2010-01-28T17:15:45Z

Quick Tour of Features and Use

Meier: /* Quick Tour of Features and Use */

2010-01-28T17:15:18Z

Quick Tour of Features and Use

Meier: Created page with 'Return to Slicer 3.4 Documentation NOTOC ===Mask Image=== Mask Image {| |Mask Image GUI |} == General…'

2010-01-28T17:14:59Z

Created page with 'Return to Slicer 3.4 Documentation __NOTOC__ ===Mask Image=== Mask Image {| |thumb|280px|Mask Image GUI |} == General…'

New page

[[Documentation-3.4|Return to Slicer 3.4 Documentation]]

__NOTOC__
===Mask Image===
Mask Image

{|
|[[Image:MaskImage_Module_icon.png|thumb|280px|Mask Image GUI]]
|}

== General Information ==
===Module Type & Category===

Type:

Category: Filtering, Arithmetic

===Authors, Collaborators & Contact===
*
* Contact:

===Module Description===

Apply a labelmap as a mask and set all pixels outside the mask (i.e. not matching the label value) to zero (or a given replacement value)

== Usage ==

===Examples, Use Cases & Tutorials===

* Useful for masking unwanted structures in processes that do not support masking directly.

===Quick Tour of Features and Use===
Input Volume: the image to be masked
Mask Volume: labelmap containing the region to be preserved as a specific (single) label value
Masked Volume: result image created. Equals the Input Volume with all voxels not part of the mask replaced.
Label Value: value of the Mask Volume to use as ROI. All voxels '''not''' matching this value will be replaced. All voxels matching this value will be preserved.
Replace Value: value to set for all voxels "outside" the mask. To remove unwanted structure, zero (0) is the common default. All voxels not matching the Label Value above will be set to this Replace Value.

== Development ==

===Dependencies===

The Volumes module is required for this module's use.

''WARNING: This module is available in Slicer 3.4 release only after 3.4.1 version (builds of Dec 10, 2009 and on)!''

===Known bugs===

Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker.

===Usability issues===

Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker. Please select the '''usability issue category''' when browsing or contributing.

===Source code & documentation===

* [http://viewvc.slicer.org/viewcvs.cgi/trunk/Applications/CLI/Cast.cxx?view=log ???.cxx]
* [http://viewvc.slicer.org/viewcvs.cgi/trunk/Applications/CLI/Cast.xml?view=log ???.xml]



== More Information ==

===Acknowledgment===

This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.

===References===

← Older revision		Revision as of 17:52, 28 January 2010
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−	[[Documentation-3.4\|Return to Slicer 3.4 Documentation]]	+	[[Documentation-3.5\|Return to Slicer 3.5 Documentation]]

	__NOTOC__		__NOTOC__

← Older revision		Revision as of 17:24, 28 January 2010
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	===Dependencies===		===Dependencies===
−
−	~~The Volumes module is required for this module's use.~~
−
−	~~''WARNING: This module is available in Slicer 3.4 release only after 3.4.1 version (builds of Dec 10, 2009 and on)!''~~

	===Known bugs===		===Known bugs===

@@ Line 31: / Line 31: @@
 ===Quick Tour of Features and Use===
-*Input Volume: the image to be masked
+*'''Input Volume:''' the image to be masked
-*Mask Volume: labelmap containing the region to be preserved as a specific (single) label value
+*'''Mask Volume:''' labelmap containing the region to be preserved as a specific (single) label value
-*Masked Volume: result image created. Equals the Input Volume with all voxels not part of the mask replaced.
+*'''Masked Volume:''' result image created. Equals the Input Volume with all voxels not part of the mask replaced.
-*Label Value:  value of the Mask Volume to use as ROI. All voxels '''not''' matching this value will be replaced. All voxels matching this value will be preserved.
+*'''Label Value:'''  value of the Mask Volume to use as ROI. All voxels '''not''' matching this value will be replaced. All voxels matching this value will be preserved.
-*Replace Value: value to set for all voxels "outside" the mask. To remove unwanted structure, zero (0) is the common default. All voxels not matching the Label Value above will be set to this Replace Value.
+*'''Replace Value:''' value to set for all voxels "outside" the mask. To remove unwanted structure, zero (0) is the common default. All voxels not matching the Label Value above will be set to this Replace Value.
 == Development ==

← Older revision	Revision as of 17:50, 28 January 2010
(No difference)

@@ Line 7: / Line 7: @@
 {|
 |[[Image:MaskImage_Module_icon.png|thumb|280px|Mask Image GUI]]
 |}

Modules:MaskImage-Documentation-3.5 - Revision history

Meier at 17:52, 28 January 2010

Meier: moved Modules:MaskImage-Documentation-3.4 to Modules:MaskImage-Documentation-3.5

Meier: /* Dependencies */

Meier: /* Mask Image */

Meier: /* Quick Tour of Features and Use */

Meier: /* Quick Tour of Features and Use */

Meier: Created page with 'Return to Slicer 3.4 Documentation __NOTOC__ ===Mask Image=== Mask Image {| |Mask Image GUI |} == General…'

Meier: Created page with 'Return to Slicer 3.4 Documentation NOTOC ===Mask Image=== Mask Image {| |Mask Image GUI |} == General…'