Modules:HistogramMatching-Documentation-3.6 - Revision history

Taox: /* Source Code and Documentation */

2010-04-29T03:27:17Z

Source Code and Documentation

Taox: /* Quick Tour of Features and Use */

2010-04-27T01:41:08Z

Quick Tour of Features and Use

Taox: /* References */

2010-04-27T01:34:33Z

References

Taox: /* Examples, Use cases & Tutorials */

2010-04-27T00:45:17Z

Examples, Use cases & Tutorials

Taox: /* References */

2010-04-27T00:44:25Z

References

Taox: /* Quick Tour of Features and Use */

2010-04-27T00:42:29Z

Quick Tour of Features and Use

Taox: /* Quick Tour of Features and Use */

2010-04-27T00:41:03Z

Quick Tour of Features and Use

Taox: /* Module Name */

2010-04-27T00:29:37Z

Module Name

Taox: /* Module Name */

2010-04-27T00:28:57Z

Module Name

Taox: /* Examples, Use cases & Tutorials */

2010-04-27T00:26:27Z

Examples, Use cases & Tutorials

@@ Line 83: / Line 83: @@
 XML Description: [http://www.na-mic.org/ViewVC/index.cgi/trunk/Applications/CLI/HistogramMatching.xml?view=co HistogramMatching.xml]
 <pre>
@@ Line 133: / Line 135: @@
    matched to the reference volume.
 </pre>
 ==More Information==

@@ Line 59: / Line 59: @@
 [[Image:HistogramMatching-IOPanels-3-6.png|thumb|right|280px|Input/Output panels]]
-The module takes two input volumes and generate one output volume. The first input is a volume whose histogram is to be transformed. The second input is a reference volume providing a target histogram for the first volume. Upon completion of execution, the result is stored in the output volume.
+The module takes two input volumes and generate one output volume. The '''Input Volume''' is the volume whose histogram is to be transformed. The '''Reference Volume''' is a volume that provide a target histogram for the first volume. Upon completion of execution, the result is stored in the '''Output Volume'''.
 * Parameters panel
 [[Image:HistogramMatching-ParametersPanels-3-6.png|thumb|right|280px|Parameters panels]]
-The user can specify parameters for the histogram module on this panel. The "number of histogram level" specifies how many levels the intensity range is divided. The "number of matching points" tells the module the number of quantile points in the histogram to be matched. When "Threshold at mean" is checked, the module will exclude background voxels from the histogram matching process.
+The user can specify parameters for the histogram module on this panel. The '''Number of Histogram Level''' specifies how many levels the intensity range is divided. The '''Number of Matching Points''' tells the module the number of quantile points in the histogram to be matched. When '''Threshold at mean''' is checked, the module will exclude background voxels from the histogram matching process.
 ==Development==

← Older revision		Revision as of 01:34, 27 April 2010
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	===References===		===References===

−	Internally, the module uses itk::HistogramMatchingImageFilter. More details on algorithm can be found [http://public.kitware.com/~~dashboard~~.~~php?name=itk~~ here].	+	Internally, the module uses itk::HistogramMatchingImageFilter. More details on algorithm can be found [http://public.kitware.com/Insight/Doxygen/html/classitk_1_1HistogramMatchingImageFilter.html here].

← Older revision		Revision as of 00:45, 27 April 2010
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	===Examples, Use cases & Tutorials===		===Examples, Use cases & Tutorials===
		+
		+	The filter was orginally designed to normalize MR images of the same MR protocol and same body part. The algorithm works best if background pixels are excluded from both the source and reference histograms.

	A command line example is:		A command line example is:

← Older revision		Revision as of 00:44, 27 April 2010
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	===References===		===References===
		+
		+	Internally, the module uses itk::HistogramMatchingImageFilter. More details on algorithm can be found [http://public.kitware.com/dashboard.php?name=itk here].

← Older revision		Revision as of 00:41, 27 April 2010
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	===Quick Tour of Features and Use===		===Quick Tour of Features and Use===
		+
		+	* Input/Output panel
		+
		+	[[Image:HistogramMatching-IOPanels-3-6.png\|thumb\|right\|280px\|Input/Output panels]]
		+	The module takes two input volumes and generate one output volume. The first input is a volume whose histogram is to be transformed. The second input is a reference volume providing a target histogram for the first volume. Upon completion of execution, the result is stored in the output volume.
		+
		+	* Parameters panel
		+
		+	[[Image:HistogramMatching-ParametersPanels-3-6.png\|thumb\|right\|280px\|Input/Output panels]]
		+	The user can specify parameters for the histogram module on this panel. The "number of histogram level" specifies how many levels the intensity range is divided. The "number of matching points" tells the module the number of quantile points in the histogram to be matched. When "Threshold at mean" is checked, the module will exclude background voxels from the histogram matching process.

	==Development==		==Development==

@@ Line 7: / Line 7: @@
 {|
-|[[Image:HistogramMatching-3-6.png|thumb|280px|Histogram Matching UI]]
+|[[Image:HistogramMatching-3-6.png|thumb|240px|Histogram Matching UI]]
-|[[Image:HistogramMatching1.png|thumb|280px|Reference image: MR Acquisition 1]]
+|[[Image:HistogramMatching1.png|thumb|240px|Reference image: MR Acquisition 1]]
-|[[Image:HistogramMatching2.png|thumb|280px|Source image: MR Acquisition 2 ]]
+|[[Image:HistogramMatching2.png|thumb|240px|Source image: MR Acquisition 2 ]]
-|[[Image:HistogramMatching3.png|thumb|280px|Output image: MR Acquisition 2 matched to MR Acquisition 1]]
+|[[Image:HistogramMatching3.png|thumb|240px|Output image: MR Acquisition 2 matched to MR Acquisition 1]]
 |}

← Older revision		Revision as of 00:26, 27 April 2010
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	===Examples, Use cases & Tutorials===		===Examples, Use cases & Tutorials===
		+
		+	A command line example is:
		+
		+	HistogramMatching --numberOfHistogramLevels 64
		+	--numberOfMatchPoints 10
		+	${TEST_DATA}/CTHeadAxial.nhdr
		+	${TEST_DATA}/MRHeadResampled.nhdr
		+	${TEMP}/HistogramMatchingTest.nhdr

	===Quick Tour of Features and Use===		===Quick Tour of Features and Use===