Modules:HammerRegistration - Revision history

Taox at 03:33, 29 April 2010

2010-04-29T03:33:08Z

2010-04-29T03:22:54Z

Quick Tour of Features and Use

2010-04-29T03:22:13Z

Source code & documentation

2010-04-29T03:20:25Z

Development

2010-04-29T02:42:25Z

Acknowledgment

2010-04-29T02:40:32Z

References

2010-04-29T02:40:13Z

References

2010-04-29T02:39:03Z

References

2010-04-29T02:37:32Z

Examples, Use Cases & Tutorials

2010-04-27T12:50:51Z

Quick Tour of Features and Use

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 None.
 ===Source code & documentation===
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 XML Description: [http://www.nitrc.org/plugins/scmsvn/viewcvs.php/hammer/SlicerModule/plugin/HammerRegistration.xml?root=hammerwml&view=log HammerRegistration.xml]
 Usage:

@@ Line 55: / Line 55: @@
 * '''Parameters panel:'''
-[[Image:HammerRegistration-ParametersPanels-3-6.png|thumb|right|280px|Orientation panels]]
+[[Image:HammerRegistration-ParametersPanels-3-6.png|thumb|right|280px|Parameters panels]]
 The two sets of parameters required are '''Tissue Labels''', which are comma-separated CSF label (1 by default), gray matter label (2 by default), and white matter label (3 by default), and '''Iterations''', which are number of iterations at three different resolutions. When using the default values of 50,20,20, it takes about 15 to 20 minutes for the module to register two volumes of size ~200x200x200.

@@ Line 83: / Line 83: @@
 ===Source code & documentation===
-Source Code:
+Source Code: [http://www.nitrc.org/plugins/scmsvn/viewcvs.php/hammer/SlicerModule/plugin/?root=hammerwml NITRC]
-XML Description:
+XML Description: [http://www.nitrc.org/plugins/scmsvn/viewcvs.php/hammer/SlicerModule/plugin/HammerRegistration.xml?root=hammerwml&view=log HammerRegistration.xml]
 Usage:

← Older revision		Revision as of 03:20, 29 April 2010
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	None.		None.
		+
		+	===Test===
		+
		+	[http://www.nitrc.org/plugins/scmsvn/viewcvs.php/hammer/SlicerModule/plugin/Testing/HammerRegistrationTest.cxx?root=hammerwml&view=log HammerRegistrationTest.cxx]

	===Source code & documentation===		===Source code & documentation===

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 through the NIH Roadmap for Medical Research, Grant U54 EB005149. This
 work is also partly supported by NIH Grant EB006733.
 ===References===

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 ===References===
 Page on NA-MIC site can be found [http://www.na-mic.org/Wiki/index.php/NA-MIC_NCBC_Collaboration:Development_and_Dissemination_of_Robust_Brain_MRI_Measurement_Tools here].
 UNC [http://www.med.unc.edu/~dgshen/HAMMER.htm page] on HAMMER.

← Older revision		Revision as of 02:40, 29 April 2010
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	Page on NA-MIC site can be found [http://www.na-mic.org/Wiki/index.php/NA-MIC_NCBC_Collaboration:Development_and_Dissemination_of_Robust_Brain_MRI_Measurement_Tools here].		Page on NA-MIC site can be found [http://www.na-mic.org/Wiki/index.php/NA-MIC_NCBC_Collaboration:Development_and_Dissemination_of_Robust_Brain_MRI_Measurement_Tools here].
		+
		+	Dinggang Shen, Christos Davatzikos, [http://www.med.unc.edu/~dgshen/papers/Hammer_VersionInTMI.pdf HAMMER: Hierarchical Attribute Matching Mechanism for Elastic Registration.]IEEE Trans Med Imaging. 2002 Nov;21(11):1421-39. PMID: 12575879.
		+
		+	UNC [http://www.med.unc.edu/~dgshen/HAMMER.htm page] on HAMMER.

← Older revision		Revision as of 02:39, 29 April 2010
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	===References===		===References===
		+
		+	Page on NA-MIC site can be found [http://www.na-mic.org/Wiki/index.php/NA-MIC_NCBC_Collaboration:Development_and_Dissemination_of_Robust_Brain_MRI_Measurement_Tools here].

@@ Line 45: / Line 45: @@
            ResampledMovingImageSegmentation.nrrd
            ResampledMovingImageIntensity.nrrd
 ===Quick Tour of Features and Use===

← Older revision		Revision as of 12:50, 27 April 2010
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	Since Slicer3 takes into account the orientation of a volume, the re-oriented volume will not show any difference from the original volume.		Since Slicer3 takes into account the orientation of a volume, the re-oriented volume will not show any difference from the original volume.
−
−	~~Note, that the module does not align the voxel space axes with the physical space axes. If your input image is not axis-aligned, the output will preserve the direction cosines of the input image.~~

	== Development ==		== Development ==