Modules:FourDAnalysis-Documentation-3.6 - Revision history

Kikinis: /* References */

2011-07-29T18:22:41Z

References

2011-07-27T15:10:55Z

References

2011-05-16T15:36:43Z

Module Description

2011-05-16T15:34:34Z

Development

2011-04-28T16:04:52Z

Authors, Collaborators & Contact

2011-04-28T16:04:34Z

Authors, Collaborators & Contact

2011-04-28T13:12:49Z

Development

2011-04-27T21:37:42Z

Step 1: Install SciPy

2011-04-27T20:34:35Z

Development

2011-04-27T15:14:18Z

Setting up curve analysis

← Older revision		Revision as of 18:22, 29 July 2011
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	===References===		===References===
−	[[media:Case1 DCE.tgz\|Sample DCE data set]]. This is from a prostate DCE acquisition.	+	[[media:Case1 DCE.tgz\|Sample DCE data set]] and [[media:2011-ProstateDCE.nrrd.zip\|after conversion to NRRD]]. This is from a prostate DCE acquisition.

← Older revision		Revision as of 15:10, 27 July 2011
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	===References===		===References===
		+	[[media:Case1 DCE.tgz\|Sample DCE data set]]. This is from a prostate DCE acquisition.

@@ Line 34: / Line 34: @@
 *'''Parameter map. (SciPy required)''' The module also allows generating a map of pharmacokinetic parameters.
-In default, only the intensity plot is available. To use the other functions, you need to [[Slicer3:Python| install scipy for 3D Slicer]] and recompile 4D Analysis module.  Please refer the section bellow for more detail.
+In default, only the intensity plot is available. To use the other functions, you need to [[Slicer3:Python| install scipy for 3D Slicer]] and recompile 4D Analysis module.  Please refer the section bellow for more detail. [[Modules:FourDAnalysis-Documentation-3.6-SciPy-Memo|Slicer3+SciPy installation memo]] has some tips regarding SciPy installation in 3D Slicer for Mac OS X.
 == Usage ==

@@ Line 105: / Line 105: @@
 == Development ==
 ===Setting up curve analysis===
 The module allows you to fit a model to actual time-intensity curves obtained from DCE MRI. Since this function requires SciPy package, which does not come with 3D Slicer in default, you need to install SciPy in 3D Slicer.

@@ Line 24: / Line 24: @@
 * Hatsuho Mamata, M.D., Ph.D., Brigham and Women's Hospital (Clinical)
 * Hiroto Hatabu, M.D., Ph.D., Brigham and Women's Hospital (Clinical)
-* Ron Kikinis, M.D., Brigham and Women's Hospital
+* Ron Kikinis, M.D., Brigham and Women's Hospital (Advisor)
-* Robert Lenkinski, Ph.D., Beth Israel Deaconess Medical Center
+* Robert Lenkinski, Ph.D., Beth Israel Deaconess Medical Center (Advisor)
 Contact: Junichi Tokuda, tokuda at bwh.harvard.edu

@@ Line 20: / Line 20: @@
 ===Authors, Collaborators & Contact===
-* Junichi Tokuda, Ph.D., Brigham and Women's Hospital
+* Junichi Tokuda, Ph.D., Brigham and Women's Hospital (Developer)
-* Wendy J Plesniak, Ph.D., Brigham and Women's Hospital
+* Wendy J Plesniak, Ph.D., Brigham and Women's Hospital (Developer)
 * Ron Kikinis, M.D., Brigham and Women's Hospital
-* Hiroto Hatabu, M.D., Ph.D., Brigham and Women's Hospital
+* Robert Lenkinski, Ph.D., Beth Israel Deaconess Medical Center
 Contact: Junichi Tokuda, tokuda at bwh.harvard.edu

@@ Line 106: / Line 106: @@
 The module allows you to fit a model to actual time-intensity curves obtained from DCE MRI. Since this function requires SciPy package, which does not come with 3D Slicer in default, you need to install SciPy in 3D Slicer.
-====Step 1: Install SciPy====
+====Step 1: Install SciPy on Slicer 3====
 Please refer [[Slicer3:Python| Slicer3 Python page]]. See [[Modules:FourDAnalysis-Documentation-3.6-SciPy-Memo|Slicer3+SciPy installation memo]] for Mac OS X user (the memo was updated on Apr, 2011).
 ====Step 2: Building 4D Analysis module with SciPy Option====
-:
+Once you set up 3D Slicer with SciPy, you can set FourDAnalysis_USE_SCIPY "ON" by running make with edit_cache option:
   $ cd <Slicer3-build directory>

@@ Line 107: / Line 107: @@
 ====Step 1: Install SciPy====
-Please refer [[Slicer3:Python| Slicer3 Python page]]. There is [[Modules:FourDAnalysis-Documentation-3.6-SciPy-Memo|a memo]] on installation of SciPy in 3D Slicer version 3 (latest revision) for Mac OS X user (the special instruction page was updated on Apr, 2011).
+Please refer [[Slicer3:Python| Slicer3 Python page]]. There is [[Modules:FourDAnalysis-Documentation-3.6-SciPy-Memo|a memo]] on installation of SciPy in 3D Slicer version 3 (latest revision) for Mac OS X user (the memo was updated on Apr, 2011).
 ====Step 2: Building 4D Analysis module with SciPy Option====