https://www.slicer.org/w/index.php?action=history&feed=atom&title=Modules%3AFiducialSeeding-Documentation-3.6 2026-04-21T19:01:20Z Revision history for this page on the wiki MediaWiki 1.33.0 https://www.slicer.org/w/index.php?title=Modules:FiducialSeeding-Documentation-3.6&diff=12906&oldid=prev 2010-03-30T15:41:25Z

<p>Created page with &#039;<a href="/wiki/Documentation-3.6" class="mw-redirect" title="Documentation-3.6">Return to Slicer 3.6 Documentation</a> __NOTOC__ ===Module Name=== &#039;&#039;&#039;Fiducial Seeding&#039;&#039;&#039; {| |[[Image:FiducialSeeding.png|thumb|280px|Seeding tracks from fidu…&#039;</p> <p><b>New page</b></p><div>[[Documentation-3.6|Return to Slicer 3.6 Documentation]]<br /> <br /> __NOTOC__<br /> ===Module Name===<br /> '''Fiducial Seeding'''<br /> <br /> {|<br /> |[[Image:FiducialSeeding.png|thumb|280px|Seeding tracks from fiducial list]]<br /> |[[Image:ModelSeeding.png|thumb|280px|Seeding tracks from models]]<br /> |}<br /> <br /> == General Information ==<br /> ===Module Type &amp; Category===<br /> Type: Interactive<br /> <br /> Category: Tractography<br /> <br /> ===Authors, Collaborators &amp; Contact===<br /> * Alex Yarmarkovich, Isomics, SPL<br /> * Steve Pieper, Isomics, SPL<br /> * Contact: Alex Yarmarkovich, alexy@bwh.harvard.edu<br /> <br /> ===Module Description===<br /> This module is used for interactive seeding of DTI fiber tracts starting from a list of fiducials or vertices of a model.<br /> == Usage ==<br /> * Parameters: select an existing setting for the module or create a new one.<br /> * Select DTI volume: select an existing tensor volume.<br /> * Select FiducialList or Model: select an existing fiducial list or a model to be used as seeds for tracking.<br /> * Output FiberBundleNode : Select the bundle that you want to create or modify from a list.<br /> * Stopping Mode: Select Linear Measure or FA to be used as stopping criteria.<br /> * Stopping Value: Select Linear Measure or FA stopping value, tracking will stop when the value drops below this one.<br /> * Stopping Track Curvature: Select the curvature stopping value in degree per mm, tracking will stop when the radius of curvature is smaller than this one.<br /> * Minimum Path Length: Select only tracts that are longer than this value (mm).<br /> * Fiducail Seeding Region Size: The size of the box around each fiducial used for seeding (mm).<br /> * Fiducail Seeding Step Size: Step between the seeding samples in the box (mm).<br /> * Seed Selected Fiducials: Flag indicating whether to use only selected fiducials for seeding or all of them.<br /> * Maximum number of seeds: Used with models to specify the limit of the number of vertices to be used for seeding.<br /> * Seed Tracks: Unable or disable seeding.<br /> <br /> ===Examples, Use Cases &amp; Tutorials===<br /> * Tutorial about [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Training DTI Tutorial].<br /> <br /> ===Quick Tour of Features and Use===<br /> <br /> == Development ==<br /> <br /> ===Dependencies===<br /> <br /> <br /> ===Known bugs===<br /> <br /> Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker. <br /> <br /> ===Usability issues===<br /> <br /> Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker. Please select the '''usability issue category''' when browsing or contributing.<br /> <br /> Follow this [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/Tractography/Seeding/ link] to the source code in ViewVC.<br /> <br /> [http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classes.html Documentation] generated by doxygen.<br /> <br /> == More Information == <br /> <br /> ===Acknowledgment===<br /> <br /> ===References===</div>

Alexy