Modules:FiducialSeeding-Documentation-3.4 - Revision history

Nicole: /* Usability issues */

2010-01-15T22:14:40Z

Usability issues

Marianna at 19:33, 26 May 2009

2009-05-26T19:33:08Z

Alexy: /* Examples, Use Cases & Tutorials */

2009-03-03T19:00:29Z

Examples, Use Cases & Tutorials

Alexy: /* Examples, Use Cases & Tutorials */

2009-03-03T19:00:15Z

Examples, Use Cases & Tutorials

Alexy: /* Examples, Use Cases & Tutorials */

2009-03-03T18:59:14Z

Examples, Use Cases & Tutorials

Alexy: New page: Return to Slicer 3.4 Documentation NOTOC ===Module Name=== '''Fiducial Seeding''' {| |Seeding tracks from fiducial list...

2009-03-03T18:58:21Z

New page: Return to Slicer 3.4 Documentation __NOTOC__ ===Module Name=== '''Fiducial Seeding''' {| |thumb|280px|Seeding tracks from fiducial list...

New page

[[Documentation-3.4|Return to Slicer 3.4 Documentation]]
__NOTOC__
===Module Name===
'''Fiducial Seeding'''

{|
|[[Image:FiducialSeeding.png|thumb|280px|Seeding tracks from fiducial list]]
|[[Image:ModelSeeding.png|thumb|280px|Seeding tracks from models]]
|}

== General Information ==
===Module Type & Category===
Type: Interactive

Category: Tractography

===Authors, Collaborators & Contact===
* Alex Yarmarkovich, Isomics, SPL
* Steve Pieper, Isomics, SPL
* Contact: Alex Yarmarkovich, alexy@bwh.harvard.edu

===Module Description===
This module is used for interactive seeding of DTI fiber tracts starting from a list of fiducials or vertices of a model.
== Usage ==
* Parameters: select an existing setting for the module or create a new one.
* Select DTI volume: select an existing tensor volume.
* Select FiducialList or Model: select an existing fiducial list or a model to be used as seeds for tracking.
* Output FiberBundleNode : Select the bundle that you want to create or modify from a list.
* Stopping Mode: Select Linear Measure or FA to be used as stopping criteria.
* Stopping Value: Select Linear Measure or FA stopping value, tracking will stop when the value drops below this one.
* Stopping Track Curvature: Select the curvature stopping value in degree per mm, tracking will stop when the radius of curvature is smaller than this one.
* Minimum Path Length: Select only tracts that are longer than this value (mm).
* Fiducail Seeding Region Size: The size of the box around each fiducial used for seeding (mm).
* Fiducail Seeding Step Size: Step between the seeding samples in the box (mm).
* Seed Selected Fiducials: Flag indicating whether to use only selected fiducials for seeding or all of them.
* Maximum number of seeds: Used with models to specify the limit of the number of vertices to be used for seeding.
* Seed Tracks: Unable or disable seeding.

===Examples, Use Cases & Tutorials===
* Tutorial about [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Training loading and viewing data].

===Quick Tour of Features and Use===

== Development ==

===Dependencies===

===Known bugs===

Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker.

===Usability issues===

Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker. Please select the '''usability issue category''' when browsing or contributing.

Follow this [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/Tractography/Seeding/ link] to the source code in ViewVC.

[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classes.html Documentation] generated by doxygen.

== More Information ==

===Acknowledgment===

===References===

@@ Line 38: / Line 38: @@
 ===Examples, Use Cases & Tutorials===
-* Tutorial about [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Training | DTI Tutorial].
+* Tutorial about [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Training  DTI Tutorial].
 ===Quick Tour of Features and Use===

@@ Line 38: / Line 38: @@
 ===Examples, Use Cases & Tutorials===
-* Tutorial about [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Training].
+* Tutorial about [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Training | DTI Tutorial].
 ===Quick Tour of Features and Use===

@@ Line 59: / Line 59: @@
 Follow this [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/Tractography/Seeding/ link] to the source code in ViewVC.
-[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classes.html Documentation] generated by doxygen.
+[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classes.html Documentation] generated by doxygen.
 == More Information ==

@@ Line 1: / Line 1: @@
 [[Documentation-3.4|Return to Slicer 3.4 Documentation]]
 __NOTOC__
 ===Module Name===

Modules:FiducialSeeding-Documentation-3.4 - Revision history

Nicole: /* Usability issues */

Marianna at 19:33, 26 May 2009

Alexy: /* Examples, Use Cases & Tutorials */

Alexy: /* Examples, Use Cases & Tutorials */

Alexy: /* Examples, Use Cases & Tutorials */

Alexy: New page: Return to Slicer 3.4 Documentation __NOTOC__ ===Module Name=== '''Fiducial Seeding''' {| |Seeding tracks from fiducial list...

Alexy: New page: Return to Slicer 3.4 Documentation NOTOC ===Module Name=== '''Fiducial Seeding''' {| |Seeding tracks from fiducial list...