Modules:ExtractSubvolume-Documentation-3.4 - Revision history

Nicole: /* Source code & documentation */

2010-01-15T22:24:53Z

Source code & documentation

Marianna at 20:22, 26 May 2009

2009-05-26T20:22:41Z

Pieper: /* Usability issues */

2009-04-06T18:06:36Z

Usability issues

Pieper: New page: Return to Slicer 3.4 Documentation NOTOC ===Module Name=== Extract Subvolume {| |Example subvolume |} == General I...

2009-04-06T18:05:36Z

New page: Return to Slicer 3.4 Documentation __NOTOC__ ===Module Name=== Extract Subvolume {| |thumb|320px|Example subvolume |} == General I...

New page

[[Documentation-3.4|Return to Slicer 3.4 Documentation]]
__NOTOC__
===Module Name===
Extract Subvolume

{|
|[[Image:Slicer3.4Subvolume.png |thumb|320px|Example subvolume]]
|}

== General Information ==
===Module Type & Category===

Type: Python Scripted Module

Category: Converters

===Authors, Collaborators & Contact===
* Steve Pieper, Isomics
* Contact: pieper@bwh.harvard.edu

===Module Description===
Create a new volume that contains the extent of the input volume that falls within the space defined by two fiducials. Note that the fiducials may not exactly match the voxel boundaries of the input volume so not all cases are handled. The first two fiducials of the input list are used.

== Usage ==

===Examples, Use Cases & Tutorials===

This can be useful when a target piece of anatomy is a small part of the source volume and you want to run a filter or other routine on only the subset.

===Quick Tour of Features and Use===

* Pick the two input corner points by creating [[Modules:Fiducials-Documentation-3.4 | fidcucials]].
* Select the input volume to extract from.
* Typically you will want to create a new output volume.

Clicking Apply will generate and display the subvolume.

Note: you can modify the fiducials and re-apply the module to tweak the extent of the subvolume.

== Development ==

===Dependencies===

Python

===Known bugs===

Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker.

===Usability issues===

Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker. Please select the '''usability issue category''' when browsing or contributing.

===Source code & documentation===

Follow this [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/Python/ link] to the module.

[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Links] to documentation generated by doxygen.

== More Information ==

===Acknowledgment===

This work is supported by NA-MIC, NAC, BIRN, NCIGT, and the Slicer Community. See http://www.slicer.org for details.

===References===

← Older revision		Revision as of 18:06, 6 April 2009
Line 52:		Line 52:

	Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker. Please select the '''usability issue category''' when browsing or contributing.		Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker. Please select the '''usability issue category''' when browsing or contributing.
		+
		+	Note: there is currently no technique to paste a subvolume into a volume.

	===Source code & documentation===		===Source code & documentation===

@@ Line 61: / Line 61: @@
 Follow this [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/Python/ link] to the module.
-[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Links] to documentation generated by doxygen.
+[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/ Links] to documentation generated by doxygen.
 == More Information ==

@@ Line 1: / Line 1: @@
 [[Documentation-3.4|Return to Slicer 3.4 Documentation]]
 __NOTOC__
 ===Module Name===

Modules:ExtractSubvolume-Documentation-3.4 - Revision history

Nicole: /* Source code & documentation */

Marianna at 20:22, 26 May 2009

Pieper: /* Usability issues */

Pieper: New page: Return to Slicer 3.4 Documentation __NOTOC__ ===Module Name=== Extract Subvolume {| |Example subvolume |} == General I...

Pieper: New page: Return to Slicer 3.4 Documentation NOTOC ===Module Name=== Extract Subvolume {| |Example subvolume |} == General I...