Modules:Editor-Documentation-3.6 - Revision history

Grundlett: Text replacement - "https?:\/\/(?:www|wiki)\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) " to "https://www.slicer.org/wiki/$1 "

2019-11-27T13:18:01Z

Text replacement - "https?:\/\/(?:www|wiki)\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) " to "https://www.slicer.org/wiki/$1 "

Kikinis: /* Using the Editor Effects */

2010-12-04T12:57:14Z

Using the Editor Effects

Pieper at 22:03, 6 May 2010

2010-05-06T22:03:50Z

Pieper at 22:01, 6 May 2010

2010-05-06T22:01:16Z

Pieper: /* Tutorials */

2010-05-06T21:54:20Z

Tutorials

Pieper: /* Module Name */

2010-05-06T21:52:44Z

Module Name

Pieper at 21:52, 6 May 2010

2010-05-06T21:52:32Z

Pieper: /* Single Label Map */

2010-05-06T21:46:01Z

Single Label Map

Pieper: /* Multiple Structures in Multiple Label Maps */

2010-05-06T21:43:43Z

Multiple Structures in Multiple Label Maps

Pieper: /* Single Label Map */

2010-05-06T21:16:58Z

Single Label Map

← Older revision		Revision as of 13:18, 27 November 2019
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−	~~http~~://www.slicer.org/~~slicerWiki/index.php~~/Modules:Editor-Documentation	+	https://www.slicer.org/wiki/Modules:Editor-Documentation [[Documentation-3.6\|Return to Slicer 3.6 Documentation]]
−
−	[[Documentation-3.6\|Return to Slicer 3.6 Documentation]]

	[[Announcements:Slicer3.6#Highlights\|Gallery of New Features]]		[[Announcements:Slicer3.6#Highlights\|Gallery of New Features]]

@@ Line 75: / Line 75: @@
 * The Delete Structures button will remove the Per-Structure Volumes from your scene.  If you want to delete a single volume, use the [[Modules:Data-Documentation-3.6|Data Module]].
-==== Using the Editor Effects ====
+== Using the Editor Effects ==
 The individual tools in the editor are described on their own [[Modules:Editor-Documentation|Editor Documentation]] page.

@@ Line 28: / Line 28: @@
 ===Module Description===
-This is a module for manual segmentation of volumes.  Some of the tools mimic a painting interface like photoshop or gimp, but work on 3D arrays of voxels rather than on 2D pixels.  The overall goal is to allow users to efficiently and precisely define structures within their volumes as label map volumes.  These label maps can be used for building models, or further processing (using, for example, the [[Modules:LabelStatistics-Documentation-3.6|Label Statistics]] module).
+This is a module for manual segmentation of volumes.  Some of the tools mimic a painting interface like photoshop or gimp, but work on 3D arrays of voxels rather than on 2D pixels.
 == Usage ==
 ===Use Cases, Examples===
 ==== Single Label Map ====
@@ Line 69: / Line 78: @@
 The individual tools in the editor are described on their own [[Modules:Editor-Documentation|Editor Documentation]] page.
 == Development ==

@@ Line 96: / Line 96: @@
 ===Notes from the Developer(s)===
-The code makes extensive use of object oriented scripting (based on the incrTcl language).  This was used primarily as a
+The code makes extensive use of object oriented scripting (based on the [http://en.wikipedia.org/wiki/Incr_Tcl incrTcl] language) calling algorithms implemented in C++ using either VTK or ITK.  The developer found this to be an extremely powerful and effective implementation approach, although many people may find it unfamiliar.
 ===Dependencies===
-Other modules or packages that are required for this module's use.
+None
 ===Tests===
@@ Line 106: / Line 106: @@
 On the [http://www.cdash.org/CDash/index.php?project=Slicer3 Dashboard], these tests verify that the module is working on various platforms:
-* MyModuleTest1 [http://viewvc.slicer.org/viewcvs.cgi/trunk MyModuleTest1.cxx]
+http://viewvc.slicer.org/viewcvs.cgi/branches/Slicer-3-6/Modules/Editor/Testing/
 ===Known bugs===
-Links to known bugs in the Slicer3 bug tracker
+Search for Editor in the [http://www.na-mic.org/Bug/view.php|Slicer3 bug tracker].  No major bugs known at the time of this writing.
 ===Usability issues===
@@ Line 125: / Line 121: @@
 Source code:
-*[http://viewvc.slicer.org/viewcvs.cgi/trunk file.cxx ]
+* http://viewvc.slicer.org/viewcvs.cgi/branches/Slicer-3-6/Modules/Editor/?rev=13274#dirlist
 Doxygen documentation:
-*[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classes.html class1]
+* Not available for incrTcl classes.  Refer to documentation in the source code linked above.
 == More Information ==
 ===Acknowledgment===
-Include funding and other support here.
 ===References===
-Publications related to this module go here. Links to pdfs would be useful.
+None.

@@ Line 71: / Line 71: @@
 ===Tutorials===
+Tutorials are in preparation for version 3.6.  For earlier versions, see the [[Training|Training page]].
 ===Quick Tour of Features and Use===

@@ Line 11: / Line 11: @@
 {|
 |[[Image:Editor3.6-interface.png|thumb|280px|User Interface]]
-|[[Image:Slicer3.6-Editor-2010-05-06.png|thumb|280px|Output]]
+|[[Image:Slicer3.6-Editor-2010-05-06.png|thumb|500px|Output]]
 |}

@@ Line 46: / Line 46: @@
 ** Clicking apply in the Color Table Dialog will create a new label map volume based on the background volume in the Red slice view at the time you entered the Editor.  It will be the same dimensions, orientation, and spacing as the background volume.  But it will be initialize to all zeros and it will have the 'Label Map' property set.  (You can look at these in the "Info" tab of the [[Modules:Volumes-Documentation-3.6|Volumes Module]].
 ** If your background was named 't1' the label will be called 't1-label'.
-** Note that if you already have a label map volume as the result of a previous editing step it will be automatically selected when you enter the Editor (i.e. after using the [[Modules:FastMarchingSegmentation-Documentation-3.6|Fast Marching]] or other [[Documentation-3.6#Segmentation|Segmentation Modules]] you will be set up to perform manual edits of the selected label map).
+** Note that if you already have a label map volume as the result of a previous editing step it will be automatically selected when you enter the Editor (i.e. after using the [[Modules:FastMarchingSegmentation-Documentation-3.6|Fast Marching]] or other [[Documentation-3.6#Segmentation|Segmentation Modules]] you will be set up to perform manual edits of the selected label map).  You can use the Set option to pick this label map instead of the default.
 ** Note that the background and label map settings in the Red slice viewer are used to determine the volumes to edit.  In the Editor Module the background grayscale volume is known as the "Master Volume" because it is used as input to tools such as Threshold Paint.  The map is known as the "Merge Volume" because it contains multiple structures (see below for information about splitting and re-merging the Merge Volume to edit individual structures).
 * When label map volume is selected, the edit tools frame will automatically expand and you can use the Editor Effects to define your structures.

@@ Line 50: / Line 50: @@
 * When label map volume is selected, the edit tools frame will automatically expand and you can use the Editor Effects to define your structures.
-==== Multiple Structures in Multiple Label Maps ====
+==== Per-Structure Volumes ====
 ==== Using the Editor Effects ====