Modules:Editor-Documentation - Revision history

Grundlett: Text replacement - "https?:\/\/(?:www|wiki)\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) " to "https://www.slicer.org/wiki/$1 "

2019-11-27T13:15:18Z

Text replacement - "https?:\/\/(?:www|wiki)\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) " to "https://www.slicer.org/wiki/$1 "

Fedorov: /* Keystrokes */

2011-06-01T22:01:34Z

Keystrokes

Fedorov: /* Keystrokes */

2011-06-01T22:01:21Z

Keystrokes

Kikinis: /* Image:ModelMaker.jpg Modelmaker */

2010-10-25T12:14:40Z

Image:ModelMaker.jpg Modelmaker

Pieper: /* Check Points */

2010-10-18T16:27:10Z

Check Points

Pieper: /* Keystrokes */

2010-10-18T16:25:33Z

Keystrokes

Pieper: /* image:IdentifyIslands.png Identify Islands */

2010-10-13T19:29:13Z

image:IdentifyIslands.png Identify Islands

Marianna at 14:20, 12 October 2010

2010-10-12T14:20:31Z

Marianna at 13:55, 12 October 2010

2010-10-12T13:55:07Z

Marianna at 13:54, 12 October 2010

2010-10-12T13:54:37Z

@@ Line 128: / Line 128: @@
 ==GrowCutSegment==
-http://wiki.slicer.org/slicerWiki/index.php/Modules:GrowCutSegmentation-Documentation-3.6
+https://www.slicer.org/wiki/Modules:GrowCutSegmentation-Documentation-3.6 ==Hints==
 [[Image:Slicer3-Editor-LabelOutline.png|thumb|400px|right|Menu to show label maps as outlines.]]
 * You can use the Image Label Combine filter to make a composite label map from two independent input label maps.  Some times it will make sense to have a separate label map for each anatomical structure and then combine them after editing.  In other cases it makes sense to put all structures into the same label map so that you can use the Paint Over option to make clean interfaces between the structures.

@@ Line 20: / Line 20: @@
 * '''b''' - move to previous slice
 * '''e''' - toggles from the current color to 0 and back (use this while painting or drawing to quickly erase if you go over the line)
-* '''a/Enter''' - apply the current outline in Draw Effect
+* '''a''' or '''Enter''' - apply the current outline in Draw Effect
 * '''x''' - delete last point added in Draw Effect
 * '''`''' - cycle through fiducials (this is the backtick key, usually between Tab and Escape)

@@ Line 20: / Line 20: @@
 * '''b''' - move to previous slice
 * '''e''' - toggles from the current color to 0 and back (use this while painting or drawing to quickly erase if you go over the line)
-* '''a''' - apply the current outline in Draw Effect
+* '''a/Enter''' - apply the current outline in Draw Effect
 * '''x''' - delete last point added in Draw Effect
 * '''`''' - cycle through fiducials (this is the backtick key, usually between Tab and Escape)

@@ Line 126: / Line 126: @@
 * Just click apply and models of all label maps will be created.
 * Model building runs in the background and the model appears in the 3D view when finished.
 ==Hints==

@@ Line 115: / Line 115: @@
 * Use Previous Fiducial [[image:PrevFiducial.png]] and Next Fiducial [[image:NextFiducial.png]] to cycle through the currently defined fiducial points
-==Check Points==
+==Undo/Redo (was Check Points prior to 3.6.2)==
-* The Editor can save state before each effect is applied.  This is useful for experimentation and error correction.  However this can be somewhat slow and very memory hungry when working with large volumes so it is disabled by default.
+* The Editor can save state before each effect is applied.  This is useful for experimentation and error correction.  Prior to version 3.6.2 this can be somewhat slow and very memory hungry when working with large volumes so it is disabled by default.  As of version 3.6.2 the save operation is light weight and is enabled by default.
 * When enabled the buttons can be used to move forward and back through the volume checkpoints.
 ==[[Image:ModelMaker.jpg]] Modelmaker==

@@ Line 24: / Line 24: @@
 * '''`''' - cycle through fiducials (this is the backtick key, usually between Tab and Escape)
 * '''Control-`''' - cycle backwards through fiducials
 ==Volumes==

@@ Line 81: / Line 81: @@
 ==[[image:IdentifyIslands.png]] Identify Islands==
-* This tool relabels each island with a different label number
+* Use this tool to create a unique label value for each connected region in the current label map.  Connected regions are defined as groups of pixels which touch each other but are surrounded by zero valued voxels.  If FullyConnected is selected, then only voxels that share a face are counted as connected; if unselected, then voxels that touch at an edge or a corner are considered connected.
 ==[[image:ChangeIsland.png]] Change Island==

@@ Line 77: / Line 77: @@
 ==[[image:LevelTracing.png]] Level Tracing==
-* moving the mouse defines an outline where the pixels all have the same background value as the current background pixel.
+* moving the mouse defines an outline where the pixels all have the same background value as the current background pixel
-* clicking the left mouse button applies that outline to the label map.
+* clicking the left mouse button applies that outline to the label map
 ==[[image:IdentifyIslands.png]] Identify Islands==
@@ Line 85: / Line 85: @@
 ==[[image:ChangeIsland.png]] Change Island==
 (work in progress)
-*Changes color of an island, where Island is a group of connected pixels with the same label. Does not change other voxels with the same label.
+* Changes color of an island, where Island is a group of connected pixels with the same label. Does not change other voxels with the same label.
 * This tool is useful after thresholding, to separate anatomy further.
-** Click Change Island.
+** Click Change Island
-** Click New Label and select a color, or enter a color number.
+** Click New Label and select a color, or enter a color number
-** Click any part of the island.
+** Click any part of the island
-** Pixels that are part of that island will receive the New Label value.
+** Pixels that are part of that island will receive the New Label value
 ==[[image:RemoveIslands.png]] Remove Islands==
-* Remove Islands: Automatically removes unlabeled voxels within a region.
+* Remove Islands: Automatically removes unlabelled voxels within a region.
-* Useful for removing small areas of noise inside a surrounding thresholded area.
+* Useful for removing small areas of noise inside a surrounding thresholded area
 ==[[image:SaveIsland.png]] Save Island==
@@ Line 101: / Line 101: @@
 ==[[image:ErodeLabel.png]] Erode and [[image:DilateLabel.png]] Dilate==
-* Add or remove a single layer of pixels from the current label value.
+* Add or remove a single layer of pixels from the current label value
 ==[[image:ChangeLabel.png]] Change Label==
-Changes ever voxel in the target label map with the input value to the output value.
+Changes every voxel in the target label map with the input value to the output value
 ==Fiducials==
-* Use Previous Fiducial [[image:PrevFiducial.png]] and Next Fiducial [[image:NextFiducial.png]] to cycle through the currently defined fiducial points.
+* Use Previous Fiducial [[image:PrevFiducial.png]] and Next Fiducial [[image:NextFiducial.png]] to cycle through the currently defined fiducial points
 ==Check Points==
 * The Editor can save state before each effect is applied.  This is useful for experimentation and error correction.  However this can be somewhat slow and very memory hungry when working with large volumes so it is disabled by default.
@@ Line 115: / Line 116: @@
 * A simple interface to of the full CLI module (See [[Modules:Modelmaker-Documentation| Model Maker Documentation]])
 * The currently selected label number will be used to build.
-* select smooth model for more pleasing results
+* Select smooth model for more pleasing results
 * Just click apply and models of all label maps will be created.
 * Model building runs in the background and the model appears in the 3D view when finished.
@@ Line 121: / Line 122: @@
 ==Hints==
 [[Image:Slicer3-Editor-LabelOutline.png|thumb|400px|right|Menu to show label maps as outlines.]]
-* You can use the Image Label Combine filter to make a composite label map from two indpendent input label maps.  Some times it will make sense to have a separate label map for each anatomical structure and then combine them after editing.  In other cases it makes sense to put all structures into the same label map so that you can use the Paint Over option to make clean interfaces between the structures.
+* You can use the Image Label Combine filter to make a composite label map from two independent input label maps.  Some times it will make sense to have a separate label map for each anatomical structure and then combine them after editing.  In other cases it makes sense to put all structures into the same label map so that you can use the Paint Over option to make clean interfaces between the structures.
 * The Model Maker can automatically make models for all non-zero values in the label map.  The option for Joint Smoothing creates a 'water tight' set of models.  If you build the models independently the smoothing will cause gaps between the models.
 * A large radius paint brush with threshold painting is often a very fast way to segment anatomy that is consistently brighter or darker than the surrounding region, but partially connected to similar nearby structures (this happens a lot).