Modules:EMSegment-Simple-3.4 - Revision history

Belhachemi: moved Modules:EMSegment-Simple to Modules:EMSegment-Simple-3.4: Refactoring the EM Wiki Pages

2010-08-19T15:08:27Z

2010-01-15T22:05:24Z

Source code & documentation

2009-05-26T20:00:01Z

2009-03-27T15:52:49Z

Quick Tour of Features and Use

2009-03-19T14:51:28Z

Examples, Use Cases & Tutorials

2009-03-19T14:43:05Z

2009-03-19T14:22:06Z

2009-03-19T14:19:16Z

2009-03-19T14:16:56Z

2009-03-18T18:17:30Z

@@ Line 69: / Line 69: @@
 [http://www.na-mic.org/ViewVC/index.cgi/trunk/Modules/EMSegment/ Links] for the module.
 *[http://www.na-mic.org/ViewVC/index.cgi/trunk/Modules/EMSegment/ View EMSegmenter Code]
-*API: [http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classvtkEMSegmentMRMLManager.html MRML Manager] | [http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classvtkEMSegmentLogic.html Module Logic] | [http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classvtkEMSegmentGUI.html Module GUI]
+*API: [http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classvtkEMSegmentMRMLManager.html MRML Manager] | [http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classvtkEMSegmentLogic.html Module Logic] | [http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classvtkEMSegmentGUI.html Module GUI]
 == More Information ==

@@ Line 1: / Line 1: @@
 [[Documentation-3.4|Return to Slicer 3.4 Documentation]]
 __NOTOC__
 ===Module Name===

@@ Line 38: / Line 38: @@
 * '''Parameters panel:''' [[Image:EMSegment-Simple-Panel.png|300px|thumb|EMSegment Simple Parameters Panel]]
-** MRML Scene: Select the tutorial parameter set
+** MRML Scene: Select the mrml scene for the tutorial parameter set
-** Result Labelmap: Select a new image filename
+** Result Labelmap: Select a new image filename for output labelmap
 ** Target Volumes: Select input target volumes (Note: target volume order is important)
 ** Click `Apply’, wait (~30 minutes for full size images)

@@ Line 31: / Line 31: @@
 * A full Tutorial for all three EMSegment modules
-These slides and data describe the Slicer3 implementation of the EMSegmenter and demonstrate its use.  A recent (later than 7Jan08) version of Slicer3 is required to run the test data.
+These slides and data describe the Slicer3 implementation of all three EMSegment modules and demonstrate their use.  A recent (later than 7Jan08) version of Slicer3 is required to run the test data.
 [[Media:EMSegTutorial-AHM2008.ppt | Slides]] - [[Media:EMSegTutorial-AHM2008.zip | Data]]

@@ Line 29: / Line 29: @@
 ===Examples, Use Cases & Tutorials===
-*2008 Tutorial
+* A full Tutorial for all three EMSegment modules
 These slides and data describe the Slicer3 implementation of the EMSegmenter and demonstrate its use.  A recent (later than 7Jan08) version of Slicer3 is required to run the test data.
@@ Line 37: / Line 37: @@
 ===Quick Tour of Features and Use===
-* '''Parameters panel:''' [[Image:EMSegment-Simple-Panel.png|300px|thumb|EMSegment Simple GUI]]
+* '''Parameters panel:''' [[Image:EMSegment-Simple-Panel.png|300px|thumb|EMSegment Simple Parameters Panel]]
 ** MRML Scene: Select the tutorial parameter set
 ** Result Labelmap: Select a new image filename
@@ Line 44: / Line 44: @@
 == Development ==
-The overall design of the EMSegmenter module is described in [[Media:EMSegTutorial-AHM2008.ppt | these slides.]]
+The module is implemented as a very simple programmatic Slicer3 module, whose purpose is to offer simple interface for segmenting new data
+with predefined parameter set. The module GUI interacts with the Logic classes, which are solely responsible for maintaining and accessing MRML nodes. The
-The module is implemented as a programmatic Slicer3 module because it
+Logic class provides APIs that the GUI code uses to access and modify data.  The Logic class also wraps the algorithm code itself.
 ===Dependencies===

← Older revision	Revision as of 15:08, 19 August 2010
(No difference)

@@ Line 40: / Line 40: @@
 ** MRML Scene: Select the tutorial parameter set
 ** Result Labelmap: Select a new image filename
-** Target Volumes: Select input target volumes from one of the target directories (e.g.,  Target_NewPatient1)
+** Target Volumes: Select input target volumes (Note: target volume order is important)
 ** Click `Apply’, wait (~30 minutes for full size images)
@@ Line 81: / Line 80: @@
 For more information about the EM Segmenter project in Slicer3 [[Slicer3:EM|see the old EMSegment Wiki page here]]
 The old [[Modules:EM-Segmenter-Documentation:FAQ |EMSegmenter FAQ]] contains frequently asked questions about the EMSegment interfaces in Slicer3.
 There is also an old [http://www.na-mic.org/Wiki/index.php/EMSegmenter_Mini-Tutorials EMSegmenter Mini-Tutorials]

@@ Line 4: / Line 4: @@
 EM Segment Simple
 {|
 |[[Image:EMSegment-Simple.png|thumb|580px|EM Segment Simple module GUI and Result]]
 |}
@@ Line 30: / Line 29: @@
 ===Examples, Use Cases & Tutorials===
-* Note use cases for which this module is especially appropriate, and/or link to examples.
+These slides and data describe the Slicer3 implementation of the EMSegmenter and demonstrate its use.  A recent (later than 7Jan08) version of Slicer3 is required to run the test data.
-* Link to examples of the module's use
-* Link to any existing tutorials
+[[Media:EMSegTutorial-AHM2008.ppt | Slides]] - [[Media:EMSegTutorial-AHM2008.zip | Data]]
 ===Quick Tour of Features and Use===
-* '''Input panel:'''
+* '''Parameters panel:''' [[Image:EMSegment-Simple-Panel.png|300px|thumb|EMSegment Simple GUI]]
-* '''Parameters panel:'''
+** MRML Scene: Select the tutorial parameter set
-* '''Output panel:'''
+** Result Labelmap: Select a new image filename
-* '''Viewing panel:'''
+** Target Volumes: Select input target volumes from one of the target directories (e.g.,  Target_NewPatient1)
 == Development ==
@@ Line 80: / Line 81: @@
 For more information about the EM Segmenter project in Slicer3 [[Slicer3:EM|see the old EMSegment Wiki page here]]
 ===Acknowledgment===

@@ Line 16: / Line 16: @@
 ===Authors, Collaborators & Contact===
 * Brad Davis: Kitware, Inc.
 * Sebastien Barre: Kitware, Inc.
 * Yumin Yuan: Kitware, Inc.
@@ Line 69: / Line 69: @@
 Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker. Please select the '''usability issue category''' when browsing or contributing.
 ===Source code & documentation===