Modules:EMDTIClustering-Documentation-3.5 - Revision history

Mmaddah: /* Quick Tour of Features and Use */

2009-11-25T16:57:00Z

Quick Tour of Features and Use

Mmaddah: /* Quick Tour of Features and Use */

2009-11-25T16:56:21Z

Quick Tour of Features and Use

Mmaddah: /* Module Name */

2009-11-24T21:15:30Z

Module Name

Mmaddah: /* Module Name */

2009-11-24T20:38:53Z

Module Name

Mmaddah: /* Module Name */

2009-11-24T20:23:17Z

Module Name

Mmaddah: /* Module Name */

2009-11-24T20:21:34Z

Module Name

Mmaddah: /* Quick Tour of Features and Use */

2009-11-24T19:57:44Z

Quick Tour of Features and Use

Mmaddah: /* Quick Tour of Features and Use */

2009-11-24T19:18:07Z

Quick Tour of Features and Use

Mmaddah: /* Quick Tour of Features and Use */

2009-11-24T18:59:51Z

Quick Tour of Features and Use

Mmaddah: /* Quick Tour of Features and Use */

2009-11-24T18:57:07Z

Quick Tour of Features and Use

@@ Line 48: / Line 48: @@
    ''Output Initial Centers''              [Optional] Selected initial cluster centers.
    ''Output Final Centers''                [Optional] Final cluster centers, colored by the mean FA value along the bundle
-                                           if "Perform tract-oriented quantitative analysis" is flaged .
+                                           if "Perform Quantitative Analysis" is flaged .
    ''Perform Quantitative Analysis''       Flag that needs to be marked if quantitative analysis is desired to be done.
    ''Output Directory''                    A directory needs to be specified if performing quantitative analysis.

@@ Line 49: / Line 49: @@
    ''Output Final Centers''                [Optional] Final cluster centers, colored by the mean FA value along the bundle
                                            if "Perform tract-oriented quantitative analysis" is flaged .
-   ''Perform tract-oriented quantitative analysis'' Flag that needs to be marked if quantitative analysis is desired to be done.
+   ''Perform Quantitative Analysis''       Flag that needs to be marked if quantitative analysis is desired to be done.
    ''Output Directory''                    A directory needs to be specified if performing quantitative analysis.
    ''File Prefix Name''                    Prefix of the output files generated through tract-oriented analysis.
    ''[[CSVfilesDescription|Description of generated CSV files by EM Clustering Module]]''
-−
 * '''Clustering Parameters:'''
    ''Compactness of Fiber Bundles''        Parameter between 1 and 5 that specifies the extent of similarity between the
                                            trajectories of each cluster. Increase the value for more compact bundles.
 * '''Advanced Parameters:'''
-   ''Space resolution''                    Space resolution for distance map calculation.
+   ''Space Resolution''                    Space resolution for distance map calculation.
    ''Maximum Distance''                    Maximum distance in mm specifies an upper threshold on the distance of points that
                                            can contribute to new center formation.

@@ Line 8: / Line 8: @@
 {|
-|[[File:shot2.JPG|thumb|280px|Trajectories colored by their cluster ID]]
+|[[File:shot1.png|thumb|280px|Module interface]]
-|[[File:shot3.JPG|thumb|280px|Final cluster centers colored by the mean FA along the bundles]]
+|[[File:shot2.png|thumb|280px|Trajectories colored by their cluster ID]]
 |}

@@ Line 8: / Line 8: @@
 {|
 |[[File:shot2.JPG|thumb|280px|Trajectories colored by their cluster ID]]
 |[[File:shot3.JPG|thumb|280px|Final cluster centers colored by the mean FA along the bundles]]

@@ Line 8: / Line 8: @@
 {|
-|[[File:shot1.JPG|thumb|280px|Module Interface]]
+|[[File:screenshot1.png|thumb|280px|Module Interface]]
 |[[File:shot2.JPG|thumb|280px|Trajectories colored by their cluster ID]]
 |[[File:shot3.JPG|thumb|280px|Final cluster centers colored by the mean FA along the bundles]]

@@ Line 44: / Line 44: @@
    ''Output Clusters''                     Clustered trajecories labeled by their cluster ID.
    ''Initial Centers''                     [optional] Initial center(s). Note that intial centers need
-                                           to be provided either by passing a set of trajectories here or a fiducial list.
+                                           to be provided by passing either a set of trajectories here or a fiducial list.
    ''Fiducials to Pick Initial Centers''   [optional] A fiducial list to generate initial center(s). For each fiducial
                                            in the list the closest trajectory in the input is selected as the initial center.

@@ Line 41: / Line 41: @@
 * '''IO panel:'''
-   ''Trajectories''     Input trajectories to be clustered.
+   ''Trajectories''                        Input trajectories to be clustered.
-   ''Centers''          Initial center(s).
+   ''Output Clusters''                     Clustered trajecories labeled by their cluster ID.
-   ''Output Clusters''  Clustered trajecories labeled by their cluster ID.
+  ''Initial Centers''                     [optional] Initial center(s). Note that intial centers need to be provided either by passing a set of trajectories here or a fiducial list.
-   ''Output Centers''   [Optional] Final cluster centers.
+  ''Fiducials to Pick Initial Centers''   [optional] A fiducial list to generate initial center(s). For each fiducial in the list the closest trajectory in the input is selected as the initial center.
    ''Perform tract-oriented quantitative analysis'' Flag that needs to be marked if quantitative analysis is desired to be done.
    ''Output Directory'' A directory needs to be specified if performing quantitative analysis.
    ''File Prefix Name'' Prefix of the output files generated through tract-oriented analysis.
 * '''Clustering Parameters:'''
    ''Iterations''       Number of EM Iterations.
-   ''Compactness of Fiber Bundles'' Parameter between 1 and 10 that specifies the extent of similarity between the trajectories of each cluster.
+   ''Compactness of Fiber Bundles''    Parameter between 1 and 5 that specifies the extent of similarity between the trajectories of each cluster. Increase the value for more compact bundles.
 * '''Advanced Parameters:'''