Modules:DTMRI-Documentation - Revision history

Alexy at 14:28, 23 June 2008

2008-06-23T14:28:01Z

Alexy at 14:21, 23 June 2008

2008-06-23T14:21:35Z

Alexy at 14:11, 23 June 2008

2008-06-23T14:11:02Z

Kikinis: /* =DisplayLoadSave */

2008-06-16T12:42:27Z

=DisplayLoadSave

Kikinis at 12:42, 16 June 2008

2008-06-16T12:42:12Z

Kikinis at 12:40, 16 June 2008

2008-06-16T12:40:08Z

Kikinis at 12:36, 22 May 2008

2008-05-22T12:36:48Z

Kikinis: New page: See DTMRI engineering pages for some of the background.

2008-05-22T12:32:49Z

New page: See DTMRI engineering pages for some of the background.

New page

See [[Slicer3:DTMRI|DTMRI engineering pages]] for some of the background.

@@ Line 6: / Line 6: @@
 * First you need to read the DWI data using Volumes module of File->Add Volume menu.
 * You can visualize individual components of the DWI volume using Volume -> Display module.
-* If necessary, fix gradient orientations and measurement frame interactively using [[Modules:Volumes:Diffusion_Editor-Documentation|Diffusion Editor module]] . Fixing the headers is a once per study activity.
+* If necessary, fix gradient orientations and measurement frame interactively using [[Modules:Volumes:Diffusion_Editor-Documentation|Diffusion Editor module]]. Fixing the headers is a once per study activity.
-* Then you can compute tensors using [[Modules:DTMRI-Documentation#Tensor Estimation from DWI Module | Diffusion Tensor -> Estimation module]]
+* Then you can compute tensors using [[Modules:DTMRI-Documentation#Tensor Estimation from DWI Module | Diffusion Tensor -> Estimation module]].
-* Now you can seed the tracts with either fiducials [[Modules:DTMRI-Documentation#Tractography Fiducial Seeding Module | Tractography -> Seeding -> Fiducial module]] or ROI's [[Modules:DTMRI-Documentation#Tractography ROI Seeding Module | Tractography -> Seeding module]]
+* Now you can seed the tracts with either fiducials [[Modules:DTMRI-Documentation#Tractography Fiducial Seeding Module | Tractography -> Seeding -> Fiducial module]] or ROI's [[Modules:DTMRI-Documentation#Tractography ROI Seeding Module | Tractography -> Seeding module]].
-* You can edit the tracts through ROI's with exclusions ROI's using [[Modules:DTMRI-Documentation#Tractography ROI Select Module | Tractography -> Editor -> ROI Select module]]
+* You can edit the tracts through ROI's with exclusions ROI's using [[Modules:DTMRI-Documentation#Tractography ROI Select Module | Tractography -> Editor -> ROI Select module]].
-* Finally, you can visualize tracts as lines, tubes, or glyphs; turn on/off lines, tubes or glyphs independent from each other using [[Modules:DTMRI-Documentation#Tractography Module | Tractography -> Display Load Save module]]
+* Finally, you can visualize tracts as lines, tubes, or glyphs; turn on/off lines, tubes or glyphs independent from each other using [[Modules:DTMRI-Documentation#Tractography Module | Tractography -> Display Load Save module]].
 =Overview of the DTI workflow=
-*First you need to read the DWI data using Volumes module of File->Add Volume menu.
+*First you need to read the DTI data using Volumes module of File->Add Volume menu.
-*If necessary, fix gradient orientations and measurement frame interactively using [[Modules:Volumes:Diffusion_Editor-Documentation|Diffusion Editor module]] . Fixing the headers is a once per study activity.
+*If necessary, fix measurement frame interactively using [[Modules:Volumes:Diffusion_Editor-Documentation|Diffusion Editor module]]. Fixing the measurement frame is a once per study activity.
-*Then compute the tensors
+* You can compute tensors scalar measurements using [[Modules:DTMRI-Documentation#TDiffusion Tensor Scalar Measurements Module| Diffusion Tensor -> Scalars module]]. You can visualize scalar measurements using Volume -> Display module.
-*now you can seed the tracts with either fiducials or ROI's. You can edit the ROI's with exclusions ROI's
+* Now you can seed the tracts with either fiducials [[Modules:DTMRI-Documentation#Tractography Fiducial Seeding Module | Tractography -> Seeding -> Fiducial module]] or ROI's [[Modules:DTMRI-Documentation#Tractography ROI Seeding Module | Tractography -> Seeding module]].
-*finally, you can turn on lines, tubes or glyphs independent from each other
+* You can edit the tracts through ROI's with exclusions ROI's using [[Modules:DTMRI-Documentation#Tractography ROI Select Module | Tractography -> Editor -> ROI Select module]].
 =Specific Modules=

@@ Line 4: / Line 4: @@
 =Overview of the DWI workflow=
-*First you need to read the DWI data using Volumes module of File->Add Volume menu.
+* First you need to read the DWI data using Volumes module of File->Add Volume menu.
-*If necessary, fix gradient orientations and measurement frame interactively using [[Modules:Volumes:Diffusion_Editor-Documentation|Diffusion Editor module]] . Fixing the headers is a once per study activity.
+* You can visualize individual components of the DWI volume using Volume -> Display module.
-*Then you can compute tensors using [[Modules:DTMRI-Documentation#Tensor Estimation from DWI Module | Diffusion Tensor -> Estimation module]]
+* If necessary, fix gradient orientations and measurement frame interactively using [[Modules:Volumes:Diffusion_Editor-Documentation|Diffusion Editor module]] . Fixing the headers is a once per study activity.
-*now you can seed the tracts with either fiducials or ROI's. You can edit the ROI's with exclusions ROI's
+* Then you can compute tensors using [[Modules:DTMRI-Documentation#Tensor Estimation from DWI Module | Diffusion Tensor -> Estimation module]]
-*finally, you can turn on lines, tubes or glyphs independent from each other
+* Now you can seed the tracts with either fiducials [[Modules:DTMRI-Documentation#Tractography Fiducial Seeding Module | Tractography -> Seeding -> Fiducial module]] or ROI's [[Modules:DTMRI-Documentation#Tractography ROI Seeding Module | Tractography -> Seeding module]]
 =Overview of the DTI workflow=

@@ Line 2: / Line 2: @@
 See [[Slicer3:DTMRI|DTMRI engineering pages]] for some of the background.
 =Overview of the workflow=
-*first you need to read the DWI data and, if necessary, fix the headers. Fixing the headers is a once per study activity.
+=Overview of the DWI workflow=
 *Then compute the tensors
 *now you can seed the tracts with either fiducials or ROI's. You can edit the ROI's with exclusions ROI's
@@ Line 9: / Line 18: @@
 =Specific Modules=
-==DisplayLoadSave==

@@ Line 1: / Line 1: @@
- [[Documentation|Return to Slicer Documentation]]
+[[Documentation|Return to Slicer Documentation]]
 See [[Slicer3:DTMRI|DTMRI engineering pages]] for some of the background.
@@ Line 9: / Line 9: @@
 =Specific Modules=
-==DisplayLoadSave=
+==DisplayLoadSave==

← Older revision		Revision as of 12:42, 16 June 2008
Line 7:		Line 7:
	*now you can seed the tracts with either fiducials or ROI's. You can edit the ROI's with exclusions ROI's		*now you can seed the tracts with either fiducials or ROI's. You can edit the ROI's with exclusions ROI's
	*finally, you can turn on lines, tubes or glyphs independent from each other		*finally, you can turn on lines, tubes or glyphs independent from each other
		+
		+	=Specific Modules=
		+	==DisplayLoadSave=

← Older revision		Revision as of 12:40, 16 June 2008
Line 2:		Line 2:

	See [[Slicer3:DTMRI\|DTMRI engineering pages]] for some of the background.		See [[Slicer3:DTMRI\|DTMRI engineering pages]] for some of the background.
		+	=Overview of the workflow=
		+	*first you need to read the DWI data and, if necessary, fix the headers. Fixing the headers is a once per study activity.
		+	*Then compute the tensors
		+	*now you can seed the tracts with either fiducials or ROI's. You can edit the ROI's with exclusions ROI's
		+	*finally, you can turn on lines, tubes or glyphs independent from each other

← Older revision		Revision as of 12:36, 22 May 2008
Line 1:		Line 1:
		+	[[Documentation\|Return to Slicer Documentation]]
		+
	See [[Slicer3:DTMRI\|DTMRI engineering pages]] for some of the background.		See [[Slicer3:DTMRI\|DTMRI engineering pages]] for some of the background.