Modules:Colors-Documentation-3.6 - Revision history

Grundlett: Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/images\/([^ ]+) ([^]]+)]" to "[http://www.slicer.org/w/img_auth.php/$1 $2]"

2019-11-27T12:40:23Z

Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/images\/([^ ]+) ([^]]+)]" to "[http://www.slicer.org/w/img_auth.php/$1 $2]"

2010-06-07T14:22:06Z

Notes from the Developer(s)

2010-04-30T19:31:19Z

Edit panel

2010-04-29T22:27:46Z

Display panel

2010-04-22T17:26:35Z

Display panel

2010-04-21T18:23:18Z

Notes from the Developer(s)

2010-04-21T18:23:00Z

Notes from the Developer(s)

2010-04-06T21:27:35Z

Display panel

2010-04-06T21:25:35Z

Display panel

2010-04-06T21:14:30Z

Display panel

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 Links to tutorials explaining how to use this module:
-* The [http://www.slicer.org/slicerWiki/images/6/67/Slicer3Course_DataLoading_3DVisualization_SoniaPujol.pdf Slicer3 Visualization Tutorial] uses the Colors module.
+* The [http://www.slicer.org/w/img_auth.php/6/67/Slicer3Course_DataLoading_3DVisualization_SoniaPujol.pdf Slicer3 Visualization Tutorial] uses the Colors module.
-** [http://www.slicer.org/slicerWiki/images/6/61/Slicer3VisualizationDataset.zip Slicer3VisualizationDataset.zip]
+** [http://www.slicer.org/w/img_auth.php/6/61/Slicer3VisualizationDataset.zip Slicer3VisualizationDataset.zip]
 ===Quick Tour of Features and Use===

← Older revision		Revision as of 14:22, 7 June 2010
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	A wiki page on [[Slicer3:LUTs_and_Ontologies \| LUTs and Ontologies]] where you can generate a Slicer Color file from a wiki page table.		A wiki page on [[Slicer3:LUTs_and_Ontologies \| LUTs and Ontologies]] where you can generate a Slicer Color file from a wiki page table.
		+
		+	To install a new defaul color file, commit it to the source code repository in Base/Logic/Resources/ColorFiles. The Slicer3/Base/Logic/CMakeLists.txt will automatically detect and install all *.txt files to the appropriate binary directory.

	===Dependencies===		===Dependencies===

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 First, give your new color table a name in the ''Name'' entry.
-Then fill in the ''Number of Colors''. The list box will be populated with the corresponding number of entries. You can reset this to a larger number w/o losing your current settings.
+Then fill in the ''Number of Colors''. The list box will be populated with the corresponding number of entries. You can reset this to a larger number w/o losing your current settings. Set it to 0 to clear out the list box.
-Then click on ''Generate'' to populate a new node from the GUI contents. The color node is now available to use in the Volumes or Edit or Save modules.
+Then click on ''Generate'' to populate a new node from the GUI contents. The color node is now available to use in the Volumes or Edit or Save modules. If you've set up user defined color file paths, the node will be set up automatically to save in the first of them.
 To edit an existing color node, click on ''Select a Color Table to Copy''. Pick a node from the drop down list, then click on the ''Copy Node'' button, it will fill in the edit box with those values. Make any changes you want, then click on the ''Generate a New Color Node'' button. At that point, the new node will show up in the File -> Save Data widget.

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 **SPL-BrainAtlas-ColorFile: useful for displaying segmented brain MRI volumes
 **SPL-BrainAtlas-2009-ColorFile: an updated brain segmentation node
-** [[image:SlicerShortLUT.png]] Slicer3_2010_Short_LUT: a table with 16 labels defined.
+** [[image:SlicerShortLUT.png]] Slicer3_2010_LabelColors: a table with 16 labels defined.
-* [[image:SlicerBrainLUT2010.png]] Slicer3_2010_Default_Brain_Lut: a brain segementation table with 16 labels defined.
+* [[image:SlicerBrainLUT2010.png]] Slicer3_2010_Brain_Labels: a brain segementation table with 16 labels defined.
 *Auto Loaded User Color Files:
 **Files loaded from the user specified color paths in the Module Settings, can be saved with the scene
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 *List box: The contents of the colour table, the entry is the integer label value, the name will show up in the label map layer of th 22d slice windows when you mouse over voxels with the corresponding value, the Color column shows how the voxel will be rendered.
 *''Show Only Named Colors'': when this box is checked, the list box will only be populated by named colours. Some colour tables can have memtpy entries that have no name and default to black, this option lets you hide or show them.
 *''Lookup Table Range Min Max''': Changes the range of values displayed, doesn't change the number of values in the table.
 ====Scalar Bar====

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 *''Lookup Table Range Min Max''': Changes the range of values displayed, doesn't change the number of values in the table.
-*''Scalar Bar''
+====Scalar Bar====
 [[Image:Slicer-Color-ScalarBar-3.6.jpeg|thumb|280px|Scalar Bar]]
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 *''Display Scalar Bar'': click on this to add a scalar bar to the scene, showing the currently selected color node in the ''Color Select'' drop down menu
-*''Title''': set the title of the scalar bar, mm is used by default
+*''Title'': set the title of the scalar bar, mm is used by default
 *''Title Properties:'' set the text display properties of the title text
 ** Color
 ** Font
 ** Style
 **Opacity
 *''Maximum number of Colors:'' set the maximum number of scalar bar segments to show
-* ''Number of labels:'' set the number of labels to show.
+*''Number of labels:'' set the number of labels to show.
 ====Edit panel====

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 ===Notes from the Developer(s)===
-A wiki page on [[Slicer3:LUTs_and_Ontologies LUTs and Ontologies]] where you can generate a Slicer Color file from a wiki page table.
+A wiki page on [[Slicer3:LUTs_and_Ontologies | LUTs and Ontologies]] where you can generate a Slicer Color file from a wiki page table.
 ===Dependencies===

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 ** a list of color nodes loaded from files, from the default Slicer color directory
 ** [[image:LabelsPelvis.png]] PelvisColor: useful for displaying segmented pelvic MRI volumes
-**64Color-Nonsemantic: A color table with no semantic labels, pure color information
+** [[image:LabelsNonSemantic.png]] 64Color-Nonsemantic: A color table with no semantic labels, pure color information
 **AbdomenColors: useful for displaying segmented abdominal MRI volumes
 **SPL-BrainAtlas-ColorFile: useful for displaying segmented brain MRI volumes

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 ** [[image:petPETMIP.png]] PET-MaximumIntensityProjection: Useful for displaying inverse grey PET data.
 * Cartilage MRI
-** [[image:CartilegeMIdGEMRIC15T.png]] dGEMRIC-1.5T: Useful for displaying 1.5 tesla delayed gadolinium-enhanced MRI of cartilage
+** [[image:CartilegeMRIdGEMRIC15T.png]] dGEMRIC-1.5T: Useful for displaying 1.5 tesla delayed gadolinium-enhanced MRI of cartilage
 ** [[image:CartilegeMIdGEMRIC3T.png]] dGEMRIC-3T: Useful for displaying 3 Tesla delayed gadolinium-enhanced MRI of cartilage
 *Default Labels from File: