Modules:ChangeTracker-Documentation-3.4 - Revision history

Grundlett: Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/images\/([^ ]+) ([^]]+)]" to "[http://www.slicer.org/w/img_auth.php/$1 $2]"

2019-11-27T12:39:55Z

Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/images\/([^ ]+) ([^]]+)]" to "[http://www.slicer.org/w/img_auth.php/$1 $2]"

Grundlett: Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2"

2019-11-27T02:30:03Z

Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2"

Grundlett: Text replacement - "\[http:\/\/wiki\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2"

2019-11-27T02:12:13Z

Text replacement - "\[http:\/\/wiki\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2"

Nicole: /* Source code & documentation */

2010-01-15T21:17:34Z

Source code & documentation

Fedorov: /* Source code & documentation */

2009-11-18T14:47:26Z

Source code & documentation

Fedorov: /* Known bugs */

2009-10-02T14:21:33Z

Known bugs

Marianna at 19:19, 26 May 2009

2009-05-26T19:19:10Z

Fedorov: /* Known bugs */

2009-05-01T21:21:37Z

Known bugs

Fedorov: /* Known bugs */

2009-04-12T19:22:12Z

Known bugs

Fedorov: /* Module Description */

2009-04-02T13:59:32Z

Module Description

@@ Line 173: / Line 173: @@
 [http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classes.html Documentation] generated by doxygen.
-[http://www.slicer.org/slicerWiki/images/4/4d/Slicer3.4.1-ChangeTrackerTutorial.pdf Tutorial slides]
+[http://www.slicer.org/w/img_auth.php/4/4d/Slicer3.4.1-ChangeTrackerTutorial.pdf Tutorial slides]
 == More Information ==

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 |Use drop-down controls to choose the two scans where you would like to measure pathology development. Currently, we support analysis of the images that correspond to two time points. Extending of the module to accept more than two time points is the feature under development.
-Note, that ChangeTracker does not "see" transforms located above volume nodes in the MRML hierarchy. If you want any transform in the MRML tree to be used as the initial pose of the image, you will need to create a new volume by resampling the original volume. Slicer3 module [http://www.slicer.org/slicerWiki/index.php/Modules:ResampleVolume2-Documentation-3.4 ResampleVolume2] can be used for this purpose.
+Note, that ChangeTracker does not "see" transforms located above volume nodes in the MRML hierarchy. If you want any transform in the MRML tree to be used as the initial pose of the image, you will need to create a new volume by resampling the original volume. Slicer3 module [[Modules:ResampleVolume2-Documentation-3.4|ResampleVolume2]] can be used for this purpose.
 |[[Image:ChangeTracker_Step1.png|thumb|250px|Step 1: Scan selection]]

@@ Line 133: / Line 133: @@
 ===Dependencies===
-ChangeTracker depends on the following modules: [http://wiki.slicer.org/slicerWiki/index.php/Modules:Volumes-Documentation-3.4 Volumes], [http://wiki.slicer.org/slicerWiki/index.php/Modules:RigidRegistration-Documentation-3.4 Rigid Registration], [http://wiki.slicer.org/slicerWiki/index.php?title=Modules:DiffeomorphicDemonsAlgorithm-Documentation03.4&action=edit DiffeomorphicDemons]
+ChangeTracker depends on the following modules: [[Modules:Volumes-Documentation-3.4|Volumes]], [[Modules:RigidRegistration-Documentation-3.4|Rigid Registration]], [http://wiki.slicer.org/slicerWiki/index.php?title=Modules:DiffeomorphicDemonsAlgorithm-Documentation03.4&action=edit DiffeomorphicDemons]
 {|
+|
-[http://wiki.slicer.org/slicerWiki/index.php/Modules:Volumes-Documentation-3.4 Volumes] module is required for the general tasks of new volume creation etc. This module should always be available in your Slicer, but can be turned off in the Slicer Application Settings. Make sure it is available.
+[[Modules:Volumes-Documentation-3.4|Volumes]] module is required for the general tasks of new volume creation etc. This module should always be available in your Slicer, but can be turned off in the Slicer Application Settings. Make sure it is available.
 ChangeTracker is using [http://slicer.spl.harvard.edu/slicerWiki/index.php/Modules:LinearRegistration-Documentation-3.2 Rigid Registration module] through the CommandLineModule shared object invocation. Note, that there are two distinct rigid registration modules in Slicer, which have identical functionality: "Linear registration" and "Rigid registration". Both of these modules should be available in your build, but "Rigid registration" *must* be available for ChangeTracker to function properly. You can verify the availability of the module manually by looking at the list of modules in the registration category.

@@ Line 171: / Line 171: @@
 Follow this [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/ChangeTracker/ link] to the ChangeTracker source code in ViewVC.
-[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classes.html Documentation] generated by doxygen.
+[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/classes.html Documentation] generated by doxygen.
 [http://www.slicer.org/slicerWiki/images/4/4d/Slicer3.4.1-ChangeTrackerTutorial.pdf Tutorial slides]

← Older revision		Revision as of 14:47, 18 November 2009
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	[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classes.html Documentation] generated by doxygen.		[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classes.html Documentation] generated by doxygen.
		+
		+	[http://www.slicer.org/slicerWiki/images/4/4d/Slicer3.4.1-ChangeTrackerTutorial.pdf Tutorial slides]

	== More Information ==		== More Information ==

← Older revision		Revision as of 14:21, 2 October 2009
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	Currently unresolved bugs:		Currently unresolved bugs:

−	* [http://na-mic.org/Mantis/view.php?id=439 Bug #439: ChangeTracker module leaks memory]
	* [http://na-mic.org/Mantis/view.php?id=571 Bug #571: ChangeTracker slow going from Step 1 to Step 2]		* [http://na-mic.org/Mantis/view.php?id=571 Bug #571: ChangeTracker slow going from Step 1 to Step 2]

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 [[Documentation-3.4|Return to Slicer 3.4 Documentation]]
 __NOTOC__
 ===ChangeTracker===

← Older revision		Revision as of 21:21, 1 May 2009
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	* [http://na-mic.org/Mantis/view.php?id=439 Bug #439: ChangeTracker module leaks memory]		* [http://na-mic.org/Mantis/view.php?id=439 Bug #439: ChangeTracker module leaks memory]
		+	* [http://na-mic.org/Mantis/view.php?id=571 Bug #571: ChangeTracker slow going from Step 1 to Step 2]

	===Usability issues===		===Usability issues===

← Older revision		Revision as of 19:22, 12 April 2009
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	Currently unresolved bugs:		Currently unresolved bugs:
−
−	* [http://na-mic.org/Mantis/view.php?id=440 Bug #440: ChangeTracker crash on mac nightly build]

	* [http://na-mic.org/Mantis/view.php?id=439 Bug #439: ChangeTracker module leaks memory]		* [http://na-mic.org/Mantis/view.php?id=439 Bug #439: ChangeTracker module leaks memory]

@@ Line 29: / Line 29: @@
 * the analyzed images are roughly aligned
 * the pathology area is characterized by bright image intensities (contrast-enhanced meningioma MRI)
-* images have similar, close to anisotropic, spacing
+* images have similar, close to isotropic, spacing
 * the change in pathology between the consequtive scans is small in relation to the total pathology volume