Modules:AtlasCreator-Documentation-3.5 - Revision history

Nicole: /* Source code & documentation */

2010-01-15T23:04:35Z

Source code & documentation

Sylvainjaume: update filenames for the screenshots in the top page preview

2010-01-12T16:47:08Z

update filenames for the screenshots in the top page preview

Sylvainjaume: /* Module Description */

2010-01-12T16:11:09Z

Module Description

Sylvainjaume: /* Authors, Collaborators & Contact */

2010-01-12T15:53:13Z

Authors, Collaborators & Contact

Sylvainjaume: /* Authors, Collaborators & Contact */

2010-01-12T14:28:32Z

Authors, Collaborators & Contact

Sylvainjaume: Create the documentation for AtlasCreator module in Slicer 3.5

2010-01-10T23:04:29Z

Create the documentation for AtlasCreator module in Slicer 3.5

New page

[[Documentation-3.5|Return to Slicer 3.5 Documentation]]
__NOTOC__
===Atlas Creator===
AtlasCreator

{|
|[[Image:AtlasCreator-initialization.jpg|thumb|280px|Initialization of the algorithm]]
|[[Image:AtlasCreator-result-adjusted.jpg|thumb|280px|Model]]
|[[Image:AtlasCreator-model.jpg|thumb|280px|Results]]
|}

== General Information ==
===Module Type & Category===

Type: Interactive

Category: Segmentation

===Authors, Collaborators & Contact===
* Sylvain Jaume, MIT
* Polina Golland, MIT
* Contact: sylvain at csail.mit.edu

===Module Description===
This module creates a statistical atlas using segmented data sets.

== Usage ==

===Examples, Use Cases & Tutorials===

* This module serves to bootstrap the EMSegment module.

===Quick Tour of Features and Use===

{|
|
The workflow of this module consists of the following steps:
|
{|
|[[Image:AtlasCreator-initialization-controls.jpg|thumb|280px|Control panel for initialization]]
[[Image:AtlasCreator-result-controls.jpg|thumb|280px|Control panel adjustment]]
|}
|}

== Development ==

Some of the desired features:
* add ability to initialize registration using fiducials
* improve documentation
* integration with EMSegment

===Dependencies===

===Known bugs===

Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker.

===Usability issues===

Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker. Please select the '''usability issue category''' when browsing or contributing.

===Source code & documentation===

Source code can accessed [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/AtlasCreator/ here]

[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Links] to documentation generated by doxygen.

== More Information ==

===Acknowledgment===
{|
|[[Image:AtlasCreator-acknowledgements.jpg|thumb|280px|Supported by NA-MIC Core 1 Algorithms]]
|}

===References===

@@ Line 5: / Line 5: @@
 {|
-|[[Image:AtlasCreator-initialization.jpg|thumb|280px|Initialization of the algorithm]]
+|[[Image:AtlasCreator-screenshot000.png|thumb|280px|Download AtlasCreator with Slicer 3.5 nightly build]]
-|[[Image:AtlasCreator-result-adjusted.jpg|thumb|280px|Model]]
+|[[Image:AtlasCreator-screenshot001.png|thumb|280px|Run Slicer, click on 'All Modules', and then 'AtlasCreator']]
-|[[Image:AtlasCreator-model.jpg|thumb|280px|Results]]
+|[[Image:AtlasCreator-screenshot002.png|thumb|280px|User interface of AtlasCreator module in Slicer 3.5]]
 |}

@@ Line 71: / Line 71: @@
 Source code can accessed [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/AtlasCreator/ here]
-[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Links] to documentation generated by doxygen.
+[http://www.na-mic.org/Slicer/Documentation/Slicer3-doc/html/ Links] to documentation generated by doxygen.
 == More Information ==

@@ Line 24: / Line 24: @@
 * Contact: sylvain at csail.mit.edu
 ===Module Description===
 This module creates a statistical atlas using segmented data sets.

@@ Line 20: / Line 20: @@
 * Sylvain Jaume, MIT
 * Raphaël Olszewski, UCL
 * Polina Golland, MIT
 * Contact: sylvain at csail.mit.edu