Modules:AtlasCreator:CongealingCLI - Revision history

Grundlett: Text replacement - "https?:\/\/(?:www|wiki)\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) " to "https://www.slicer.org/wiki/$1 "

2019-11-27T13:19:19Z

Text replacement - "https?:\/\/(?:www|wiki)\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) " to "https://www.slicer.org/wiki/$1 "

2011-04-15T15:59:41Z

Authors, Collaborators & Contact

2011-04-15T15:56:51Z

Command Line Interface

2011-04-15T15:54:58Z

Examples

2011-04-15T15:54:04Z

Module Type & Category

2011-04-15T15:53:47Z

Congealing Commandline Wrapper

2011-04-07T01:39:35Z

CongealingCLI

2011-04-07T01:38:46Z

Graphical User Interface in 3D Slicer

2011-04-07T01:31:45Z

CongealingCLI

2011-04-07T01:30:43Z

Command Line Interface

@@ Line 37: / Line 37: @@
 |-
-|Program documentation-url || http://www.slicer.org/slicerWiki/index.php/Modules:AtlasCreator
+|Program documentation-url || https://www.slicer.org/wiki/Modules:AtlasCreator |-
 |}

@@ Line 14: / Line 14: @@
 Author: Daniel Haehn and Kilian Pohl, University of Pennsylvania
-Achknowledgment: The research was funded by an ARRA supplement to NIH NCRR (P41 RR13218).
+Collaborators: J. De Bonet, L. Zöllei and W.M. Wells III
-−
 == Graphical User Interface in 3D Slicer ==
 {|

@@ Line 103: / Line 103: @@
     ./CongealingCLI  [--returnparameterfile <std::string>]
                      [--processinformationaddress <std::string>] [--xml]
-                     [--echo] [--launch <std::string>] [--test
+                     [--echo] [--launch <std::string>] [--outputPath
-                     <std::string>] [--congeal_optimize_bestpoints <int>]
+                     <std::string>] [--test <std::string>]
                      [--congeal_schedule__n__optimize_samples
                      <std::vector<int>>]
@@ Line 174: / Line 175: @@
       The path to the congeal executable. Congeal will only be executed, if
       this is set.
     --test <std::string>

@@ Line 361: / Line 361: @@
 <pre>
 $ ./CongealingCLI
-Configuration file written to /var/tmp/tmp.0.YQNbrV
+Configuration file written to /tmp/congealing.config
 </pre>
@@ Line 380: / Line 380: @@
   --congeal_schedule__n__optimize_warp__3__ false,false,false,false,true --congeal_schedule__n__optimize_iterations 30,30,30,30,30
   --congeal_schedule__n__optimize_samples 50000,50000,500000,500000,500000 --congeal_optimize_bestpoints 1000 --test congeal
-Configuration file written to /var/tmp/tmp.0.YQNbrV
+Configuration file written to /tmp/congealing.config
 </pre>

@@ Line 8: / Line 8: @@
 Type: CLI
-Category:
+Category: Registration
 ==Authors, Collaborators & Contact==

@@ Line 4: / Line 4: @@
 CongealingCLI is a wrapper to access the Congealing Un-biased Groupwise Registration tool. It is now possible to generate a configuration file for Congealing by using a GUI or command line arguments. In fact, by not specifying any arguments and just running the wrapper, a default configuration file for congeal is generated.
-=== Graphical User Interface in 3D Slicer ===
+==Module Type & Category==
 {|
 |[[Image:CongealingCLIdefault.png|thumb|300px|The '''simple GUI''' mask, directly usable to create a default configuration file or to launch Congeal after specifying the path.]]
@@ Line 10: / Line 26: @@
 |[[Image:CongealingCLIbottom.png|thumb|300px|The '''advanced GUI''' after the last couple of panels were expanded.]]
 |}
 === Command Line Interface ===

← Older revision		Revision as of 01:39, 7 April 2011
Line 1:		Line 1:

−	=~~= CongealingCLI =~~=	+	= Congealing Commandline Wrapper =

	CongealingCLI is a wrapper to access the Congealing Un-biased Groupwise Registration tool. It is now possible to generate a configuration file for Congealing by using a GUI or command line arguments. In fact, by not specifying any arguments and just running the wrapper, a default configuration file for congeal is generated.		CongealingCLI is a wrapper to access the Congealing Un-biased Groupwise Registration tool. It is now possible to generate a configuration file for Congealing by using a GUI or command line arguments. In fact, by not specifying any arguments and just running the wrapper, a default configuration file for congeal is generated.

← Older revision		Revision as of 01:38, 7 April 2011
Line 5:		Line 5:

	=== Graphical User Interface in 3D Slicer ===		=== Graphical User Interface in 3D Slicer ===
		+	{\|
		+	\|[[Image:CongealingCLIdefault.png\|thumb\|300px\|The '''simple GUI''' mask, directly usable to create a default configuration file or to launch Congeal after specifying the path.]]
		+	\|[[Image:CongealingCLItop.png\|thumb\|300px\|The '''advanced GUI''' after the first couple of panels were expanded.]]
		+	\|[[Image:CongealingCLIbottom.png\|thumb\|300px\|The '''advanced GUI''' after the last couple of panels were expanded.]]
		+	\|}

	=== Command Line Interface ===		=== Command Line Interface ===