Modules:AffineRegistration-Documentation-3.6 - Revision history

Meier at 21:17, 30 April 2010

2010-04-30T21:17:32Z

2010-04-30T21:15:49Z

2010-04-28T19:35:29Z

Notes from the Developers(s)

2010-04-28T18:33:32Z

Limitations

2010-04-28T18:32:42Z

Tests

2010-04-28T16:46:15Z

Development

2010-04-28T15:33:55Z

Parameter Description

2010-04-28T15:33:09Z

Short tutorial

2010-04-28T15:32:49Z

Examples, Use Cases & Tutorials

2010-04-28T15:32:01Z

Authors, Collaborators & Contact

@@ Line 3: / Line 3: @@
 __NOTOC__
-===Fast Affine Registration===
+=Fast Affine Registration=
 Fast Affine Registration

@@ Line 3: / Line 3: @@
 __NOTOC__
-===Affine Registration===
+===Fast Affine Registration===
-Affine Registration
+Fast Affine Registration
 {|
-|[[Image:AffineRegistration.png|thumb|280px|Affine Registration Module]]
+|[[Image:AffineRegistration.png|thumb|280px|Fast Affine Registration Module]]
 |}

@@ Line 79: / Line 79: @@
 ===Notes from the Developers(s)===
-This is a oretty standard example of using the ITK registration framework with mutual information.  There is extra handling to include an initial transformation to seed the registration. If no initial transform is specified, than one is created that centers the two datasets.
+This is a pretty standard example of using the ITK registration framework with mutual information.  There is extra handling to include an initial transformation to seed the registration. If no initial transform is specified, than one is created that centers the two datasets.
 The code operates on a variety of pixel types which makes for a long compilation sequence.

@@ Line 92: / Line 92: @@
 ===Limitations===
-The module uses an [http://www.itk.org/Doxygen/html/classitk_1_1OrientImageFilter.html itkOrientImageFilter] to realign the fixed and moving images to axial before registration.  This is required due to limitations in [http://www.itk.org/Wiki/Proposals:Orientation ITK's handling] of non-axial images in filters used by registration.
+The module uses an [http://www.itk.org/Doxygen/html/classitk_1_1OrientImageFilter.html itkOrientImageFilter] to realign the fixed and moving images to axial before registration.  This used to be required due to limitations in [http://www.itk.org/Wiki/Proposals:Orientation ITK's handling] of non-axial images in filters used by registration. The reorientation may be removed at a later date.
 ===Known bugs===

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 ===Tests===
+* [http://www.na-mic.org/ViewVC/index.cgi/trunk/Applications/CLI/Testing/AffineRegistrationTest.cxx AffineRegistrationTest.cxx]
 ===Limitations===

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 == Development ==
 ===Dependencies===
 No other modules are required for this module.
 ===Limitations===

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 The fixed image is set to the DWI baseline and the moving image is set to the mean fMRI. The DWI baseline resolution is 1.67x1.67x1.7mm and the fMRI resolution is 1.875x1.875x3mm. The default settings are sufficient to register these images.
-===Parameter Description===
+===Quick Tour of Features and Use===
 * '''Preprocessing'''
 ** '''Smoothing level for fixed image''' Amount of smoothing applied to fixed image prior to registration. Default is 0 (none). Range is 0-5 (unitless). Consider smoothing the input data if there is considerable amounts of noise or the noise pattern in the fixed and moving images is very different.

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 * The affine transformation allows a limited degree of deformation and frequently is used as a pre-processing step for higher order transformations such as the [[Modules:DeformableB-SplineRegistration-Documentation-3.4|BSpline]] and [[Modules:DiffeomorphicDemonsAlgorithm-Documentation03.4| Demons]].
-===Short tutorial===
+===Tutorial===
 ====Case 1 (Dan B.)====

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 == Usage ==
-===Examples, Use Cases & Tutorials===
+=== Use Cases, Examples ===
 * This module is often used to align images of different subjects.

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 ===Authors, Collaborators & Contact===
-* Author: Daniel Blezek, Jim Miller
+* Author: Daniel Blezek
 * Contact: daniel.blezek at gmail.com, millerjv at ge.com