EMSegmenter-UseCaseAdvertisement - Revision history

Grundlett: Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2"

2019-11-27T02:25:19Z

Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2"

Belhachemi: /* Limitations/Disclaimer */

2011-05-05T15:54:05Z

Limitations/Disclaimer

Pohl: /* Limitations/Disclaimer */

2011-05-03T13:26:22Z

Limitations/Disclaimer

Pohl at 15:19, 28 January 2011

2011-01-28T15:19:29Z

Pohl at 15:17, 28 January 2011

2011-01-28T15:17:40Z

Belhachemi at 20:12, 5 January 2011

2011-01-05T20:12:12Z

Belhachemi at 20:10, 5 January 2011

2011-01-05T20:10:31Z

Belhachemi: /* What We Will Do */

2011-01-05T20:06:33Z

What We Will Do

Belhachemi: /* What We Will Do */

2011-01-05T20:01:59Z

What We Will Do

Belhachemi: /* Limitations/Disclaimer */

2011-01-05T19:59:48Z

Limitations/Disclaimer

@@ Line 19: / Line 19: @@
 * we will create a 3DSlicer scene with optimized EM Segmenter parameters for your use case
 * we will send you the final result as well as the procedure and parameters
-* we will add your use case (3DSlicer scene + atlas data) to our [http://www.slicer.org/slicerWiki/index.php/EMSegmenter-Tasks Segmentation Task Library] which will become part of a future 3DSlicer version
+* we will add your use case (3DSlicer scene + atlas data) to our [[EMSegmenter-Tasks|Segmentation Task Library]] which will become part of a future 3DSlicer version
 * this will contain parameters for a successful segmentation which you can load directly into slicer and apply on your data
 * this page will also contain a description of your segmentation problem, the exact workflow of obtaining the segmentation, an acknowledgment of your lab and links to your institution and related research paper

@@ Line 28: / Line 28: @@
 * we can assist only with 3DSlicer software.
-* this is a time-limited service, available in a first trial until 'September 1, 2011.
+* this is a time-limited service, available in a first trial until 'July 1, 2011.
 * depending on workload, we try to get you something within a few weeks, but we cannot guarantee a particular result or a specific turnaround time.
 * all shared data-sets are anonymized. Sharing anonymized data in most cases is IRB exempt based on Code of Federal Regulations 45 CFR 46.101(b), which lists as exemption category 4:

@@ Line 28: / Line 28: @@
 * we can assist only with 3DSlicer software.
-* this is a time-limited service, available in a first trial until 'July 1, 2011.
+* this is a time-limited service, available in a first trial until 'September 1, 2011.
 * depending on workload, we try to get you something within a few weeks, but we cannot guarantee a particular result or a specific turnaround time.
 * all shared data-sets are anonymized. Sharing anonymized data in most cases is IRB exempt based on Code of Federal Regulations 45 CFR 46.101(b), which lists as exemption category 4:

@@ Line 1: / Line 1: @@
 [[EMSegmenter-Overview|Return to EMSegmenter Overview Page]] <BR>
-[[File:EMSegmenterLogo.png]]
+[[File:EMSegmenterLogo.png|center]]
 =Call for Datasets for the EM Segmenter Use Case Library=

@@ Line 1: / Line 1: @@
-[[EMSegmenter-Overview|Return to EMSegmenter Overview Page]]
+[[EMSegmenter-Overview|Return to EMSegmenter Overview Page]] <BR>
 =Call for Datasets for the EM Segmenter Use Case Library=
-Let us help you turn your segmentation problem into a success story. If you have an interesting or vexing segmentation problem that is not yet covered in the Library , send us your case: we will try to segment it for you and design a tailored segmentation approach you can use. We then add the anonymized data to the library and build a guided step-by-step tutorial for it. This is a time and resource limited service available until July 1, 2011. <br>
+Let us help you turn your segmentation problem into a success story. If you have an interesting segmentation problem that is not yet covered in the [[EMSegmenter-Tasks| library ]], send us your case: we will try to segment it for you and design a tailored segmentation approach you can use. We then add the anonymized data to the library and build a guided step-by-step tutorial for it. This is a time and resource limited service available until July 1, 2011. <br>
 If interested drop a line to '''Dominique.Belhachemi at uphs.upenn.edu''' or '''Kilian.Pohl at uphs.upenn.edu'''
 =What You Will Need To Do=
 * just send us an Email with a brief description of the problem
-* send us your image data with the corresponding manual segmentation. Please provide more than 10 instances, so that we can generate a robust atlas.
+* send us your image data with the corresponding (manual) segmentation. Please provide more than 10 instances, so that we can generate a robust atlas. Please also insure that the data can be publicly distributed
 * save your image data as NRRD or NIFTI files
 * if you are unsuccessful in saving the data as described above (which is the anonymization), see our  [http://wiki.na-mic.org/Wiki/index.php/Projects:RegistrationDocumentation:Anonymization Anonymization Instructions] , or let us know and we'll walk you through it.
@@ Line 18: / Line 16: @@
 =What We Will Do=
-* based on your manual segmentations we will create a atlas
+* based on your segmentations we will create an atlas
 * we will create a 3DSlicer scene with optimized EM Segmenter parameters for your use case
 * we will send you the final result as well as the procedure and parameters

← Older revision		Revision as of 20:12, 5 January 2011
Line 1:		Line 1:
		+	[[EMSegmenter-Overview\|Return to EMSegmenter Overview Page]]

−	~~[[EMSegmenter-Overview\|Return to EMSegmenter Overview Page]]~~

	=Call for Datasets for the EM Segmenter Use Case Library=		=Call for Datasets for the EM Segmenter Use Case Library=

← Older revision		Revision as of 20:10, 5 January 2011
Line 1:		Line 1:
		+
		+	[[EMSegmenter-Overview\|Return to EMSegmenter Overview Page]]
		+
	=Call for Datasets for the EM Segmenter Use Case Library=		=Call for Datasets for the EM Segmenter Use Case Library=

@@ Line 23: / Line 23: @@
 * this page will contain a description of your segmentation problem, the exact workflow of obtaining the segmentation, an acknowledgment of your lab and links to your institution and related research paper
 * if you can provide us with criteria that define a good segmentation, we will use them in optimization efforts.
-* example of what the final shared product will look like
+* [[ EMSegmenter-Tasks:MRI-Human-Brain-Parcellation | example of what the final shared product will look like ]]
 =Limitations/Disclaimer=

@@ Line 30: / Line 30: @@
 * this is a time-limited service, available in a first trial until 'July 1, 2011.
 * depending on workload, we try to get you something within a few weeks, but we cannot guarantee a particular result or a specific turnaround time.
-* all shared data-sets are anonymized:
+* all shared data-sets are anonymized. Sharing anonymized data in most cases is IRB exempt based on Code of Federal Regulations 45 CFR 46.101(b), which lists as exemption category 4:
-            Unless otherwise required by department or agency heads, [...] the following categories are exempt [...]:
+    Unless otherwise required by department or agency heads, [...] the following categories are exempt [...]:
-−
 .Research involving the collection or study of existing data, documents, records , pathological specimens,
-              or diagnostic specimens, if these sources are publicly available or if the information is recorded by the
+    or diagnostic specimens, if these sources are publicly available or if the information is recorded by the
-              investigator in  such a manner that subjects cannot be identified, directly or through identifiers linked
+    investigator in  such a manner that subjects cannot be identified, directly or through identifiers linked
-              to the subjects.
+    to the subjects.