EMSegmenter-Tasks:Human-Eye - Revision history

Grundlett: Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2"

2019-11-27T02:22:51Z

Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2"

2011-05-26T22:08:42Z

Anatomical Tree

2011-05-05T20:24:11Z

Collaborators

2011-04-29T20:54:42Z

Collaborators

2011-04-29T20:53:31Z

Atlas

2011-04-27T16:21:10Z

Atlas

2011-04-27T15:18:23Z

2011-04-27T15:04:59Z

Collaborators

2011-04-27T14:09:35Z

Atlas

2011-04-27T14:08:21Z

Atlas

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 =Description=
 Single channel automatic segmentation of t1w-MRI brain scans into the major tissue classes (gray matter, white matter, csf). The task can only be applied to t1w brain scan showing parts of the skull and neck. The pipeline consist of the following steps:
-* Step 1: Perform image inhomogeneity correction of the MRI scan via [http://www.slicer.org/slicerWiki/index.php/Modules:N4ITKBiasFieldCorrection-Documentation-3.6 N4ITKBiasFieldCorrection] (Tustison et al 2010)
+* Step 1: Perform image inhomogeneity correction of the MRI scan via [[Modules:N4ITKBiasFieldCorrection-Documentation-3.6|N4ITKBiasFieldCorrection]] (Tustison et al 2010)
 * Step 2: Register the atlas to the MRI scan via [[Modules:BRAINSFit| BRAINSFit]] (Johnson et al 2007)
 * Step 3: Compute the intensity distributions for each structure <BR>

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 =Anatomical Tree=
-labels/colors need to be updated
+* root
-* root
+* not used
 ** 3 (white) : not used
-** 4 (blue) : inferior extraocular muscle
+** 7 (azure blue) : not used
-** 5 (red) : medial extraocular muscle
+** 10 (olive green) : not used
 =Atlas=

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 =Collaborators=
-Dr Raphael Olszewski DDS,MD,PhD, Department of oral and maxillofacial surgery, Cliniques universitaires saint Luc, Université catholique of Louvain, Brussels, Belgium
+Dr Raphael Olszewski DDS,MD,PhD, Department of oral and maxillofacial surgery, Cliniques universitaires saint Luc, Université catholique of Louvain, Brussels, Belgium [http://www.stom.ucl.ac.be/]
 =Acknowledgment=

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 =Collaborators=
-Raphaël Olszewski, l'Université catholique de Louvain à Louvain-La-Neuve, Belgium
+Dr Raphael Olszewski DDS,MD,PhD, Department of oral and maxillofacial surgery, Cliniques universitaires saint Luc, Université catholique of Louvain, Brussels, Belgium
 =Acknowledgment=

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 =Atlas=
-Atlas was generated based on 5 scans and corresponding segmentations provided by Raphaël Olszewski, l'Université catholique de Louvain à Louvain-La-Neuve, Belgique [link]. We registered the scans to a preselected template via the   [[Modules:AtlasCreator|atlas creator]] using the fixed template approach by  (Warfield et al. 2001.) <BR>
+Atlas was generated based on 5 scans and corresponding segmentations provided by Raphaël Olszewski, l'Université catholique de Louvain à Louvain-La-Neuve, Belgium [http://www.stom.ucl.ac.be/]. We registered the scans to a preselected template via the   [[Modules:AtlasCreator|atlas creator]] using the fixed template approach by  (Warfield et al. 2001.) <BR>
 Image Dimension = 256 x 256 x 100 <br>
 Image Spacing   = 1 x 1 x 1 <BR>

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 <gallery perrow=1: widths=630px : heights=210px>
 Image:EMS HumanEyeAtlasLabels.png
 </gallery>