UpdateBot: Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

2013-06-14T08:04:38Z

Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

Marianna: Created page with ' Back to LUTs and Ontologies Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords [http://labelpage.halle.us/ Go…'

2012-12-19T18:08:14Z

Created page with ' Back to LUTs and Ontologies *Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords * [http://labelpage.halle.us/ Go…'

New page

[[Slicer3:LUTs_and_Ontologies|Back to LUTs and Ontologies]]

*Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
* [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format. '''WARNING''': the conversion fails on the alpha channel if using rgba(R, G, B, 255) instead of rgb(R, G, B) or rgba(R, G, B, 1.0). If the last column of the generated text file contains 65025, change it to 255.
* [[Slicer3:Mori-Atlas_labels_JHU-MNI_SS_Type-I]]
* [[Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-II]]
* [[Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-III]]
*List

=Look-up Table for the Mori WM Atlas labels=
Work in progress.
{| class="wikitable sortable labelpage labelpagetable" border="1"
! integer_label
! text_label
! color
|-
| 0
| Background
|style="color:white; background:black"| rgba(0,0,0,0)
|-
| 1
| MCP_Middle_cerebellar_peduncle
| style="background:gold"| gold
|-
| 2
| PCT_Pontine_crossing_tract_(a_part_of_MCP) genotype
| style="background:navajowhite"| navajowhite
|-
| 3
| GCC_Genu_of_corpus_callosum
| style="background:plum"| plum
|-
| 4
| BCC_Body_of_corpus_callosum
| style="background:pink"| pink
|-
| 5
| SCC_Splenium_of_corpus_callosum
| style="background:deeppink"| deeppink
|-
|6
| FX_Fornix_(column_and_body_of_fornix)
| style="background:peru"| peru
|-
|7
| CST-R_Corticospinal_tract_right
| style="background:tan"| tan
|-
| 8
| CST-L_Corticospinal_tract_left
| style="background:tan"| tan
|-
| 9
| ML-R_Medial_lemniscus_right
| style="background:mediumspringgreen"| mediumspringgreen
|-
| 10
| ML-L_Medial_lemniscus_left
| style="background:mediumspringgreen"| mediumspringgreen
|-
| 11
| ICP-R_Inferior_cerebellar_peduncle_right
| style="background:palegreen"| palegreen
|-
| 12
| ICP-L_Inferior_cerebellar_peduncle_left
| style="background:palegreen"| palegreen
|-
| 13
| SCP-R_Superior_cerebellar_peduncle_right
| style="background:bisque"| bisque
|-
| 14
| SCP-L_Superior_cerebellar_peduncle_left
| style="background:bisque"| bisque
|-
| 15
| CP-R_Cerebral_peduncle_right
| style="background:khaki"| khaki
|-
| 16
| CP-L_Cerebral_peduncle_left
| style="background:khaki"| khaki
|-
| 17
| ALIC-R_Anterior_limb_of_internal_capsule_right
| style="background:lightskyblue"| lightskyblue
|-
| 18
| ALIC-L_Anterior_limb_of_internal_capsule_left
| style="background:lightskyblue"| lightskyblue
|-
| 19
| PLIC-R_Posterior_limb_of_internal_capsule_right
| style="background:dodgerblue"| dodgerblue
|-
| 20
| PLIC-L_Posterior_limb_of_internal_capsule_left
| style="background:dodgerblue"| dodgerblue
|-
| 21
| RLIC-R_Retrolenticular_part_of_internal_capsule_right
| style="background:deepskyblue"| deepskyblue
|-
| 22
| RLIC-L_Retrolenticular_part_of_internal_capsule_left
| style="background:deepskyblue"| deepskyblue
|-
| 23
| ACR-R_Anterior_corona_radiata_right
| style="background:powderblue"| powderblue
|-
| 24
| ACR-L_Anterior_corona_radiata_left
| style="background:powderblue"| powderblue
|-
| 25
| SCR-R_Superior_corona_radiata_right
| style="background:blue"| blue
|-
| 26
| SCR-L_Superior_corona_radiata_left
| style="background:blue"| blue
|-
| 27
| PCR-R_Posterior_corona_radiata_right
| style="background:skyblue"| skyblue
|-
| 28
| PCR-L_Posterior_corona_radiata_left
| style="background:skyblue"| skyblue
|-
| 29
| PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right
| style="background:sandybrown"| sandybrown
|-
| 30
| PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left
| style="background:sandybrown"| sandybrown
|-
| 31
| SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right
| style="background:peachpuff"| peachpuff
|-
| 32
| SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left
| style="background:peachpuff"| peachpuff
|-
| 33
| EC-R_External_capsule_right
| style="background:darksalmon"| darksalmon
|-
| 34
| EC-L_External_capsule_left
| style="background:darksalmon"| darksalmon
|-
| 35
| CGC-R_Cingulum_(cingulate_gyrus)_right
| style="background:mediumseagreen"| mediumseagreen
|-
| 36
| CGC-L_Cingulum_(cingulate_gyrus)_left
| style="background:mediumseagreen"| mediumseagreen
|-
| 37
| CGH-R_Cingulum_(hippocampus)_right
| style="background:darkkhaki"| darkkhaki
|-
| 38
| CGH-L_Cingulum_(hippocampus)_left
| style="background:darkkhaki"| darkkhaki
|-
| 39
| FX-R_Fornix_Stria_terminalis_right
| style="background:darkgoldenrod"| darkgoldenrod
|-
| 40
| FX-L_Fornix_Stria_terminalis_left
| style="background:darkgoldenrod"| darkgoldenrod
|-
| 41
| SLF-R_Superior_longitudinal_fasciculus_right
| style="background:lightgray"| lightgray
|-
| 42
| SLF-L_Superior_longitudinal_fasciculus_left
| style="background:lightgray"| lightgray
|-
| 43
| SFO-R_Superior_fronto-occipital_fasciculus_right
| style="background:darkgrey"| darkgrey
|-
| 44
| SFO-R_Superior_fronto-occipital_fasciculus_left
| style="background:darkgrey"| darkgrey
|-
| 45
| IFO-R_Inferior_fronto-occipital_fasciculus_right
| style="background:gray"| gray
|-
| 46
| IFO-L_Inferior_fronto-occipital_fasciculus_left
| style="background:gray"| gray
|-
| 47
| UNC-R_Uncinate_fasciculus_right
| style="background:brown"| brown
|-
| 48
| UNC-L_Uncinate_fasciculus_left
| style="background:brown"| brown
|-
| 49
| TAP-R_Tapetum_right
| style="background:mistyrose"| mistyrose
|-
| 50
| TAP-L_Tapetum_left
| style="background:mistyrose"| mistyrose
|}

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	[[Slicer3:LUTs_and_Ontologies\|Back to LUTs and Ontologies]]		[[Slicer3:LUTs_and_Ontologies\|Back to LUTs and Ontologies]]

Documentation/Nightly/SlicerApplication/LookupTables/Mori-Atlas labels - Revision history

UpdateBot: Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

Marianna: Created page with ' Back to LUTs and Ontologies *Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords * [http://labelpage.halle.us/ Go…'

Marianna: Created page with ' Back to LUTs and Ontologies Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords [http://labelpage.halle.us/ Go…'