Documentation/Nightly/Modules/TractographyInteractiveSeeding - Revision history

Grundlett: Text replacement - "\bhttps:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+)\b " to "https://www.slicer.org/wiki/$1 "

2019-11-27T14:01:12Z

Text replacement - "\bhttps:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+)\b " to "https://www.slicer.org/wiki/$1 "

Grundlett: Text replacement - "https?:\/\/(?:www|wiki)\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) " to "https://www.slicer.org/wiki/$1 "

2019-11-27T13:16:22Z

Text replacement - "https?:\/\/(?:www|wiki)\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) " to "https://www.slicer.org/wiki/$1 "

Zhangfanmark at 20:31, 6 July 2016

2016-07-06T20:31:38Z

Lauren at 16:55, 6 July 2016

2016-07-06T16:55:15Z

Zhangfanmark at 16:51, 6 July 2016

2016-07-06T16:51:46Z

Lauren at 16:51, 6 July 2016

2016-07-06T16:51:32Z

Lauren at 16:48, 6 July 2016

2016-07-06T16:48:31Z

Zhangfanmark at 15:41, 6 July 2016

2016-07-06T15:41:26Z

Inorton: Created page with "{{documentation/versioncheck}} {{documentation/{{documentation/version}}/module-header}}

@@ Line 49: / Line 49: @@
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
 Links to tutorials that use this module:
-* Slicer4 Diffusion Tensor Imaging Tutorial: https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Training#Slicer4_Diffusion_Tensor_Imaging_Tutorial
+* Slicer4 Diffusion Tensor Imaging Tutorial: https://www.slicer.org/wiki/Documentation/Nightly/Training#Slicer4_Diffusion_Tensor_Imaging_Tutorial * Slicer4 Neurosurgical Planning Tutorial: https://www.slicer.org/wiki/Documentation/4.5/Training#Slicer4_Neurosurgical_Planning_Tutorial <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels and their use}}

@@ Line 50: / Line 50: @@
 Links to tutorials that use this module:
 * Slicer4 Diffusion Tensor Imaging Tutorial: https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Training#Slicer4_Diffusion_Tensor_Imaging_Tutorial
-* Slicer4 Neurosurgical Planning Tutorial: https://www.slicer.org/slicerWiki/index.php/Documentation/4.5/Training#Slicer4_Neurosurgical_Planning_Tutorial
+* Slicer4 Neurosurgical Planning Tutorial: https://www.slicer.org/wiki/Documentation/4.5/Training#Slicer4_Neurosurgical_Planning_Tutorial <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels and their use}}

@@ Line 65: / Line 65: @@
 ** Output FiberBundle: Select the bundle that you want to create or modify from a list.
 ** Enable Seeding Tracts: A toggle to enable/disable seeding. Disable if you want to change multiple parameters without re-running module at each step.
-* Seeding Placement Option panel (only shown when fiducials or a model is selected):
+* Seed Placement Option panel:
 ** Fiducial Region Size: The size of the box around each fiducial used for seeding (mm).
 ** Fiducial Seeding Step Size: Step between the seeding samples in the box (mm).
 ** Seed Selected Fiducials: Flag indicating whether to use only selected fiducials for seeding or all of them.
 ** Maximum Number of Seeds: Used with models to specify the limit of the number of vertices to be used for seeding.
 * Tractography Seeding Parameters panel:
 ** Minimum Path Length: Select only tracts that are longer than this value (mm).

@@ Line 66: / Line 66: @@
 ** Enable Seeding Tracts: A toggle to enable/disable seeding. Disable if you want to change multiple parameters without re-running module at each step.
 * Seeding Placement Option panel (only shown when fiducials or a model is selected):
-** Fiducail Region Size: The size of the box around each fiducial used for seeding (mm).
+** Fiducial Region Size: The size of the box around each fiducial used for seeding (mm).
-** Fiducail Seeding Step Size: Step between the seeding samples in the box (mm).
+** Fiducial Seeding Step Size: Step between the seeding samples in the box (mm).
 ** Seed Selected Fiducials: Flag indicating whether to use only selected fiducials for seeding or all of them.
 ** Maximum Number of Seeds: Used with models to specify the limit of the number of vertices to be used for seeding.

@@ Line 27: / Line 27: @@
 |Image:Logo-splnew.jpg|Surgical Planning Laboratory
 |Image:NAC-logo.png|NAC
-|Image:Fiducial Seeding.png| Tractography Fiducial Seeding
+|Image:Fiducials seeding 1.png| Tractography Fiducial Seeding
-|Image:LabelMap Seeding.png| Tractography Label Map Seeding
+|Image:Fiducials seeding 2.png| Tractography Fiducial Seeding
 }}
 {{documentation/{{documentation/version}}/module-introduction-end}}

@@ Line 35: / Line 35: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Module Description}}
-This module is used for interactive seeding of DTI fiber tracts starting from a list of fiducial points or vertices of a model, or a label map volume.[[documentation/{{documentation/version}}/Modules/{{documentation/modulename}}#References|references]] giving more details on the algorithm.
+This module is used for interactive seeding of DTI fiber tracts starting from a list of fiducial points or vertices of a model, or a label map volume.
@@ Line 50: / Line 50: @@
 Links to tutorials that use this module:
 * Slicer4 Diffusion Tensor Imaging Tutorial: https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Training#Slicer4_Diffusion_Tensor_Imaging_Tutorial
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels and their use}}
 {|style="width: 100%"
@@ Line 99: / Line 98: @@
 {{documentation/{{documentation/version}}/module-section|Similar Modules}}
 * Tractography Label Map Seeding
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|References}}
-Publications related to this module go here. Links to pdfs would be useful.
+* Interactive Diffusion Tensor Tractography Visualization for Neurosurgical Planning: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3112275/
-For extensions: link to the source code repository and additional documentation
+*  http://slicerdmri.github.io/
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Information for Developers}}
-{{documentation/{{documentation/version}}/module-developerinfo}}
+* https://github.com/SlicerDMRI

@@ Line 8: / Line 8: @@
 {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
 {{documentation/{{documentation/version}}/module-introduction-row}}
-This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
-Author: Alex Yarmarkovich, Isomics, SPL<br>
-Contributor1: Demian Wassermann, SPL<br>
+Title: Tractography Interactive Seeding
-Contributor2: Steve Pieper, Isomics, SPL<br>
-Contact:  Alex Yarmarkovich, <email>alexy@bwh.harvard.edu</email><br>
+Author(s)/Contributor(s): Alex Yarmarkovich, Steve Pieper, Demian Wassermann, Isaiah Norton (SPL, LMI, BWH, SlicerDMRI)
 {{documentation/{{documentation/version}}/module-introduction-row}}