Documentation/Nightly/Modules/SurfaceRegistration - Revision history

Jb.vimort at 21:05, 29 February 2016

2016-02-29T21:05:37Z

Jb.vimort at 16:50, 15 January 2016

2016-01-15T16:50:43Z

Fbudin at 21:46, 12 October 2015

2015-10-12T21:46:18Z

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2015-10-12T21:42:34Z

pictures

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2015-10-12T21:42:14Z

pictures

Fbudin: /* description */

2015-10-12T21:41:08Z

description

Fbudin: /* description */

2015-10-12T21:40:43Z

description

Fbudin: /* description */

2015-10-12T21:39:31Z

description

Fbudin: /* inputs/outputs */

2015-10-12T21:37:07Z

inputs/outputs

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2015-10-12T21:35:49Z

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@@ Line 12: / Line 12: @@
 Author: Jean-Baptiste Vimort (University of Michigan)<br>
 Contributors: Francois Budin (UNC), Juan Carlos Prieto (UNC), Beatriz Paniagua (UNC), Lucia Cevidanes (University of Michigan)<br>
-Contact: Jean-Baptiste Vimort, <email>jvimort@umich.edu</email><br>
+Contact: Jean-Baptiste Vimort, <email>jb.vimort@gmail.com</email><br>
 {{documentation/{{documentation/version}}/module-introduction-row}}
 <gallery>

@@ Line 29: / Line 29: @@
 {{documentation/{{documentation/version}}/module-section|Use Cases}}
 ==Fiducials Registration==
-===pictures===
+===Pictures===
 {|
 |[[Image:SurfaceRegistrationFR.png|thumb|400px|Before fiducial registration]]
@@ Line 36: / Line 36: @@
 |}
-===inputs/outputs===
+===Inputs/Outputs===
 * <span style="color:blue">'''Inputs'''</span>:
 ** <span style="color:green">'''Fixed Model'''</span>: 3D model (vtk file) that won't move.
@@ Line 46: / Line 46: @@
 ** <span style="color:green">'''output transform'''</span>: linear transform node in which the transformation computed by the algorithm will be saved.
-===description===
+===Description===
 The fiducial registration computes a rigid, similarity, or affine transform from a matched list of fiducials using the SurfaceRegistration module. The algorithm needs the same number of fiducial in each list, and at least 3 fiducials per list. <br>
 The 'add landmarks' section allows the user to add and move landmarks. Landmarks can be projected on the surfaces or not.
 ==Surface Registration==
-===pictures===
+===Pictures===
 {|
 |[[Image:SurfaceRegistrationSR.png|thumb|400px|Before Surface Registration]]
@@ Line 58: / Line 58: @@
 |}
-===inputs/outputs===
+===Inputs/Outputs===
 * <span style="color:blue">'''Inputs'''</span>:
 ** <span style="color:green">'''Fixed Model'''</span>: 3D model (vtk file) that won't move.
@@ Line 66: / Line 66: @@
 ** <span style="color:green">'''output transform'''</span>: linear transform node in which the computed transformation is saved.
-===description===
+===Description===
 The fiducial registration computes a rigid, similarity, or affine transform to register two models using the Iterative Closest Point algorithm. This algorithm doesn't require the two models to have the same number of points.
 ==ROI Registration==
-===pictures===
+===Pictures===
 {|
 |[[Image:SurfaceRegistrationROIR.png|thumb|400px|Before ROI (Region Of Interest) Registration]]
@@ Line 77: / Line 77: @@
 |}
-===inputs/outputs===
+===Inputs/Outputs===
 * <span style="color:blue">'''Inputs'''</span>:
 ** <span style="color:green">'''Fixed Model'''</span>: 3D model (vtk file) that won't move.
@@ Line 86: / Line 86: @@
 ** <span style="color:green">'''Output model'''</span>: 3D model that will save the result of the moving model after the transformation.
 ** <span style="color:green">'''output transform'''</span>: linear transform that will save the transform compute by the algorithm.
-===description===
+===Description===
 The fiducial registration computes a rigid, similarity, or affine transform from a matched part of models based on the Iterative Closest Point algorithm. This algorithm doesn't require the regions of each model to have the same number of points.
 The 'add landmarks' section allows user to define the regions of interest (ROIs) by positioning a landmark on a 3D model and defining a radius for the region (the radius is defined in term of neighbors and not in millimeters).

@@ Line 24: / Line 24: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Module Description}}
-This module allows user to compute and apply registrations between 3D models (VTK file). The user can either use the entire mesh of both models (Surface Registration), just a region of interest (ROI Registration), or two fiducial lists which can be projected on the meshes (Fiducial Registration).
+This module allows the user to compute and apply transformations (registration) between two 3D models (VTK file). The registration can be computed using the entire mesh of both models (Surface Registration), just a region of interest (ROI Registration) on each model, or two fiducial lists which can be projected on the meshes (Fiducial Registration).
 <!-- ---------------------------- -->
@@ Line 47: / Line 47: @@
 ===description===
-The fiducial registration will compute a rigid, similarity, or affine transform from a matched list of fiducials using the SurfaceRegistration module. The algorithm needs the same number of fiducial in each list, and at least 3 fiducials per list. <br>
+The fiducial registration computes a rigid, similarity, or affine transform from a matched list of fiducials using the SurfaceRegistration module. The algorithm needs the same number of fiducial in each list, and at least 3 fiducials per list. <br>
 The 'add landmarks' section allows the user to add and move landmarks. Landmarks can be projected on the surfaces or not.
@@ Line 87: / Line 87: @@
 ** <span style="color:green">'''output transform'''</span>: linear transform that will save the transform compute by the algorithm.
 ===description===
-The fiducial registration will compute a rigid, similarity or affine transform from a matched part of models based on the Iterative Closest Point algorithm. This algorithm don't necessitate that the two part of models to have the same number of points.
+The fiducial registration computes a rigid, similarity, or affine transform from a matched part of models based on the Iterative Closest Point algorithm. This algorithm doesn't require the regions of each model to have the same number of points.
-The add landmarks section will allow user to define the regions of interest (ROIs) by positioning a landmark on the 3D model and defining a radius for the region (the radius is defined in term of neighbors and not in millimeter).
+The 'add landmarks' section allows user to define the regions of interest (ROIs) by positioning a landmark on a 3D model and defining a radius for the region (the radius is defined in term of neighbors and not in millimeters).
 <!-- ---------------------------- -->

@@ Line 74: / Line 74: @@
 |[[Image:SurfaceRegistrationROIR.png|thumb|400px|Before ROI (Region Of Interest) Registration]]
 |[[Image:SurfaceRegistrationROIRInterface.png|thumb|400px|Interface of ROI (Region Of Interest) Registration]]
-|[[Image:SurfaceRegistrationROIRResult.png|thumb|400px|Result of ROI (Region Of Interest) Registration]]
+|[[Image:SurfaceRegistrationROIRResult.png|thumb|400px|Result after ROI (Region Of Interest) Registration]]
 |}

@@ Line 72: / Line 72: @@
 ===pictures===
 {|
-|[[Image:SurfaceRegistrationROIR.png|thumb|400px|Before the Region Of Interest registration]]
+|[[Image:SurfaceRegistrationROIR.png|thumb|400px|Before ROI (Region Of Interest) Registration]]
-|[[Image:SurfaceRegistrationROIRInterface.png|thumb|400px|Interface of the Region Of Interest registration]]
+|[[Image:SurfaceRegistrationROIRInterface.png|thumb|400px|Interface of ROI (Region Of Interest) Registration]]
-|[[Image:SurfaceRegistrationROIRResult.png|thumb|400px|Result of the Region Of Interest registration]]
+|[[Image:SurfaceRegistrationROIRResult.png|thumb|400px|Result of ROI (Region Of Interest) Registration]]
 |}
 ===inputs/outputs===
 * <span style="color:blue">'''Inputs'''</span>:

@@ Line 62: / Line 62: @@
 ** <span style="color:green">'''Moving Model'''</span>: 3D model (vtk file) that will move.
 * <span style="color:blue">'''Outputs'''</span>:
-** <span style="color:green">'''Output model'''</span>: 3D model that will save the result of the moving model after the transformation.
+** <span style="color:green">'''Output model'''</span>: 3D model node in which the transformed moving model will be saved.
-** <span style="color:green">'''output transform'''</span>: linear transform that will save the transform compute by the algorithm.
+** <span style="color:green">'''output transform'''</span>: linear transform node in which the computed transformation is saved.
 ===description===
 The fiducial registration will compute a rigid, similarity or affine transform from a matched models based on the Iterative Closest Point algorithm. This algorithm don't necessitate that the two models to have the same number of points.

@@ Line 52: / Line 52: @@
 ===pictures===
 {|
-|[[Image:SurfaceRegistrationSR.png|thumb|400px|Before the surface registration]]
+|[[Image:SurfaceRegistrationSR.png|thumb|400px|Before Surface Registration]]
-|[[Image:SurfaceRegistrationSRInterface.png|thumb|400px|Interface of the surface registration]]
+|[[Image:SurfaceRegistrationSRInterface.png|thumb|400px|Surface Registration Interface]]
-|[[Image:SurfaceRegistrationSRResult.png|thumb|400px|Result of the surface registration]]
+|[[Image:SurfaceRegistrationSRResult.png|thumb|400px|Result after Surface Registration]]
 |}
 ===inputs/outputs===
 * <span style="color:blue">'''Inputs'''</span>: