https://www.slicer.org/w/index.php?action=history&feed=atom&title=Documentation%2FNightly%2FModules%2FSeparateVectorImage
Documentation/Nightly/Modules/SeparateVectorImage - Revision history
2026-04-13T01:23:31Z
Revision history for this page on the wiki
MediaWiki 1.33.0
https://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/SeparateVectorImage&diff=52754&oldid=prev
Jb.vimort at 14:38, 6 July 2017
2017-07-06T14:38:21Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 14:38, 6 July 2017</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l41" >Line 41:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** <span style="color:green">'''Output File Base Name'''</span> [<span style="color:orange">index: 1</span>] : File name that will be used to save the output volumes (.nrrd files): a number (corresponding to the index of the extracted component in the input file) will be added to this name for each output volume</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** <span style="color:green">'''Output File Base Name'''</span> [<span style="color:orange">index: 1</span>] : File name that will be used to save the output volumes (.nrrd files): a number (corresponding to the index of the extracted component in the input file) will be added to this name for each output volume</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"><!-- ---------------------------- --></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">{{documentation/{{documentation/version}}/module-section|Additional Information}}</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* [http://www.insight-journal.org/browse/publication/985 InsightJournal article]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* [https://github.com/InsightSoftwareC BoneTextureExtension Tutorial]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!-- ---------------------------- --></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!-- ---------------------------- --></div></td></tr>
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Jb.vimort
https://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/SeparateVectorImage&diff=52735&oldid=prev
Jb.vimort at 14:12, 6 July 2017
2017-07-06T14:12:53Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 14:12, 6 July 2017</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l11" >Line 11:</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>'''''Contributors:''''' Beatriz Paniagua (Kitware Inc), Lucia Cevidanes (University of Michigan - School of Dentistry), Erika Benavides (University of Michigan - School of Dentistry), Antônio Carlos de Oliveira Ruellas (University of Michigan - School of Dentistry)<br></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>'''''Contributors:''''' Beatriz Paniagua (Kitware Inc), Lucia Cevidanes (University of Michigan - School of Dentistry), Erika Benavides (University of Michigan - School of Dentistry), Antônio Carlos de Oliveira Ruellas (University of Michigan - School of Dentistry)<br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>'''''Contact:''''' Jean-Baptiste Vimort, <email>jb.vimort@kitware.com</email><br></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>'''''Contact:''''' Jean-Baptiste Vimort, <email>jb.vimort@kitware.com</email><br></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>'''''Acknowledgments:''''' This work was supported by the National Institute of Health (NIH) National Institute for Dental and <del class="diffchange diffchange-inline">Cranio-</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>'''''Acknowledgments:''''' This work was supported by the National Institute of Health (NIH) National Institute for Dental and <ins class="diffchange diffchange-inline">Craniofacial </ins>Research (NIDCR) grant <ins class="diffchange diffchange-inline">R21DE025306 </ins>(Textural Biomarkers of Arthritis for the Subchondral Bone in the Temporomandibular Joint), NIDCR grant R01DE024450 (Quantification of 3D bony Changes in</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">facial </del>Research (NIDCR) grant <del class="diffchange diffchange-inline">R01EB021391 </del>(Textural Biomarkers of Arthritis for the Subchondral Bone</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Temporomandibular Joint Osteoarthritis) and National Institute of Biomedical Imaging and Bioengineering NIBIB) grant R01EB021391 (Shape Analysis Toolbox for Medical Image Computing Projects).<br></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>in the Temporomandibular Joint), NIDCR grant R01DE024450 (Quantification of 3D bony Changes in</div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Temporomandibular Joint Osteoarthritis) and National Institute of Biomedical Imaging and Bioengineering</div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">(</del>NIBIB) grant R01EB021391 (Shape Analysis Toolbox for Medical Image Computing Projects).<br></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>'''''License:''''' [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>'''''License:''''' [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
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Jb.vimort
https://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/SeparateVectorImage&diff=52720&oldid=prev
Jb.vimort at 20:46, 5 July 2017
2017-07-05T20:46:45Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 20:46, 5 July 2017</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!-- ---------------------------- --></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!-- ---------------------------- --></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>This <del class="diffchange diffchange-inline">CLI </del>can be used in order to separate a vectorImage (i.e. a diffusion weighted image) into several images.<br></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>This <ins class="diffchange diffchange-inline">module </ins>can be used in order to separate a vectorImage (i.e. a diffusion weighted image) into several images.<br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Each created image will contain one component of the input vectorImage.<br></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Each created image will contain one component of the input vectorImage.<br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><br></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><br></div></td></tr>
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Jb.vimort
https://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/SeparateVectorImage&diff=52705&oldid=prev
Jb.vimort: Created page with "<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- --------------------..."
2017-07-05T20:30:54Z
<p>Created page with "<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- --------------------..."</p>
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{{documentation/{{documentation/version}}/module-header}}<br />
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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
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'''''Extensions:''''' [https://www.slicer.org/wiki/Documentation/Nightly/Extensions/BoneTextureExtesion BoneTextureExtesion]<br><br />
'''''Author:''''' Jean-Baptise Vimort, Kitware Inc.<br><br />
'''''Contributors:''''' Beatriz Paniagua (Kitware Inc), Lucia Cevidanes (University of Michigan - School of Dentistry), Erika Benavides (University of Michigan - School of Dentistry), Antônio Carlos de Oliveira Ruellas (University of Michigan - School of Dentistry)<br><br />
'''''Contact:''''' Jean-Baptiste Vimort, <email>jb.vimort@kitware.com</email><br><br />
'''''Acknowledgments:''''' This work was supported by the National Institute of Health (NIH) National Institute for Dental and Cranio-<br />
facial Research (NIDCR) grant R01EB021391 (Textural Biomarkers of Arthritis for the Subchondral Bone<br />
in the Temporomandibular Joint), NIDCR grant R01DE024450 (Quantification of 3D bony Changes in<br />
Temporomandibular Joint Osteoarthritis) and National Institute of Biomedical Imaging and Bioengineering<br />
(NIBIB) grant R01EB021391 (Shape Analysis Toolbox for Medical Image Computing Projects).<br><br />
'''''License:''''' [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]<br />
<br />
<gallery><br />
Image:Kitware-logo.png|Kitware Inc.<br />
Image:UofM-logo.png|University of Michigan<br />
</gallery><br />
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{{documentation/{{documentation/version}}/module-introduction-end}}<br />
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{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
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This CLI can be used in order to separate a vectorImage (i.e. a diffusion weighted image) into several images.<br><br />
Each created image will contain one component of the input vectorImage.<br><br />
<br><br />
For example, if the input is a diffusion-weighted image where each voxel contains a vector of 8 values, 8 images will be generated as outputs.<br><br />
<br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
<br />
{|<br />
|[[Image:SeparateVectorImage-Interface.png|500px]]<br />
|<br />
* <span style="color:blue">'''''Input Parameters'''''</span>: <br />
** <span style="color:green">'''Input Volume'''</span> [<span style="color:orange">index: 0</span>] : diffusion weighted image that need to be separated<br />
** <span style="color:green">'''Output File Base Name'''</span> [<span style="color:orange">index: 1</span>] : File name that will be used to save the output volumes (.nrrd files): a number (corresponding to the index of the extracted component in the input file) will be added to this name for each output volume<br />
|}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
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{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
The source code is available on [https://github.com/Kitware/BoneTextureExtension/tree/master/SeparateVectorImage github]<br />
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{{documentation/{{documentation/version}}/module-footer}}<br />
[[Category:Documentation/{{documentation/version}}/Modules/ShapeAnalysis]]<br />
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