Documentation/Nightly/Modules/SegmentCAD - Revision history

Vnarayan at 15:29, 30 April 2014

2014-04-30T15:29:54Z

Vnarayan at 18:52, 28 April 2014

2014-04-28T18:52:05Z

Vnarayan at 18:50, 28 April 2014

2014-04-28T18:50:35Z

Vnarayan at 18:39, 28 April 2014

2014-04-28T18:39:04Z

Vnarayan at 17:55, 28 April 2014

2014-04-28T17:55:31Z

Vnarayan at 17:51, 28 April 2014

2014-04-28T17:51:27Z

Vnarayan: Created page with '{{documentation/versioncheck}} {{documentation/{{documentation/version}}/module-header}}

@@ Line 53: / Line 53: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
-[[Media:OpenCADTutorial.pptx|{{documentation/modulename}} Tutorial (pptx)]]‎
+[[Media:SegmentCADTutorial.pptx|{{documentation/modulename}} Tutorial (pptx)]]‎
 <!-- ---------------------------- -->

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 {{documentation/{{documentation/version}}/module-section|Features}}
 *Segmentation - Generate Label Map delineating the regions of enhanced perfusion corresponding to the tumor with color representing the Type of Curve.
-*Interactive Charting - Calculates and displays the percent increase from baseline(pre-contrast intensity) of the voxel under the current mouse pointer location, at each time point. On the X-axis, 0.0 is Pre-contrast, 1.0 is First Post-contrast, ..., 4.0 is Final Post-contrast time points. The Y-axis represents percentage change from baseline/pre-contrast intensity.
+*Interactive Charting - Calculates and displays the percent increase from baseline(pre-contrast intensity) of the voxel under the current mouse pointer location, at each time point. On the X-axis, 0.0 is Pre-contrast, 1.0 is First Post-contrast, ..., 4.0 is the Final Post-contrast time point. The Y-axis represents percentage change from baseline/pre-contrast intensity.
 *Volume Rendering - A 3D Volume Rendering of the output Label Map is displayed in the 3D viewer after segmentation.
 *Label Statistics - Tabular display of statistics of all '''First Post-contrast''' time point voxels highlighted in the output Label Map and grouped according to curve type (Type I, II, and III). These statistics include: Voxel Count, Volume mm^3, Volume cc, Minimum Intensity, Maximum Intensity, Mean Intensity, Standard Deviation.
@@ Line 90: / Line 90: @@
 ***'''Ignore Zero label:''' Ignore the unsegmented region of the First Post-contrast image when displaying bar graph.
 * '''Interactive Charting Settings'''
-**'''Enable/Disable Interactive Charting:''' Toggle the calculation and display of the percent increase from baseline(pre-contrast intensity) of the voxel under the current mouse pointer location, at each time point. On the X-axis, 0.0 is Pre-contrast, 1.0 is First Post-contrast, ..., 4.0 is Final Post-contrast. Y-axis represents percentage change from baseline intensity.
+**'''Enable/Disable Interactive Charting:''' Toggle the calculation and display of the percent increase from baseline(pre-contrast intensity) of the voxel under the current mouse pointer location, at each time point. On the X-axis, 0.0 is Pre-contrast, 1.0 is First Post-contrast, ..., 4.0 is the Final Post-contrast. Y-axis represents percentage change from baseline intensity.
 |[[Image:SegmentCAD-GUI.png|thumb|340px|{{documentation/modulename}} GUI ]]
 |}

@@ Line 91: / Line 91: @@
 * '''Interactive Charting Settings'''
 **'''Enable/Disable Interactive Charting:''' Toggle the calculation and display of the percent increase from baseline(pre-contrast intensity) of the voxel under the current mouse pointer location, at each time point. On the X-axis, 0.0 is Pre-contrast, 1.0 is First Post-contrast, ..., 4.0 is Final Post-contrast. Y-axis represents percentage change from baseline intensity.
-|[[Image:OpenCAD-GUI.png|thumb|340px|{{documentation/modulename}} GUI ]]
+|[[Image:SegmentCAD-GUI.png|thumb|340px|{{documentation/modulename}} GUI ]]
 |}

@@ Line 103: / Line 103: @@
 *Select the third post-contrast volume
 *Select the fourth post-contrast volume
+*Uncheck 'Use Label Map as ROI'
 *Create or select a label map volume node to represent the output of the segmentation
 *Click "Apply SegmentCAD"
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Module Output}}
-[[Image:OpenCAD-Output.png|thumb|center|500px|{{documentation/modulename}} Module Output ]]
+[[Image:SegmentCAD-Output.png|thumb|center|500px|{{documentation/modulename}} Module Output ]]
 <!-- ---------------------------- -->

@@ Line 83: / Line 83: @@
 **'''Type I (Persistent) Curve Minimum Slope:''' The minimum slope of the delayed curve for a voxel to be classified as having a Type I Persistent Curve (default set at 0.2).
 **'''Type 3 (Washout) Curve Maximum Slope:''' The maximum slope of the delayed curve for a voxel to be classified as having a Type III Washout Curve (default set at -0.2).
-*'''Apply SegmentCAD Segmentation:''' Perform Segmentation.
+*'''Apply SegmentCAD:''' Perform Segmentation.
 * '''SegmentCAD Label Statistics'''
 **'''Statistics Table:''' Table displaying statistics of all First Post-contrast time point voxels highlighted by the Label Map and grouped according to curve type (Type I, II, and III).

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 {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
 {{documentation/{{documentation/version}}/module-introduction-row}}
 This work is supported by NA-MIC, NCIGT, and the Slicer Community.<br>
 Author: Vivek Narayan, Jayender Jagadeesan<br>