Documentation/Nightly/Modules/PatientHierarchy - Revision history

Pinter at 17:54, 12 February 2014

2014-02-12T17:54:04Z

Pinter: Replaced content with 'This page has moved here.'

2014-02-12T17:52:52Z

Replaced content with 'This page has moved [[Documentation/{{documentation/version}}/Modules/SubjectHierarchy|here]].'

Pinter: Rename from patient hierarchy to subject hierarchy and from structure set to contour set

2014-02-04T22:25:35Z

Rename from patient hierarchy to subject hierarchy and from structure set to contour set

Pinter at 14:11, 9 December 2013

2013-12-09T14:11:41Z

Pinter at 17:42, 5 November 2013

2013-11-05T17:42:15Z

Pinter: Updated patient hierarchy feature list

2013-10-01T21:34:45Z

Updated patient hierarchy feature list

Pinter at 22:19, 26 August 2013

2013-08-26T22:19:07Z

Pinter at 21:35, 26 August 2013

2013-08-26T21:35:08Z

Pinter: Added link to SlicerRT home

2013-08-26T21:33:51Z

Added link to SlicerRT home

Pinter: Changed layout

2013-08-26T21:31:12Z

Changed layout

← Older revision		Revision as of 17:54, 12 February 2014
Line 1:		Line 1:
−	This page has moved [[Documentation/{{documentation/version}}/Modules/SubjectHierarchy\|here]].	+	<noinclude>{{documentation/versioncheck}}</noinclude>
		+	<!-- ---------------------------- -->
		+	{{documentation/{{documentation/version}}/module-header}}
		+	<!-- ---------------------------- -->
		+
		+
		+	'''This page has moved [[Documentation/{{documentation/version}}/Modules/SubjectHierarchy\|here]].'''

← Older revision		Revision as of 17:52, 12 February 2014
Line 1:		Line 1:
−	~~<noinclude>{{documentation/versioncheck}}</noinclude>~~	+	This page has moved [[Documentation/{{documentation/version}}/Modules/SubjectHierarchy\|here]].
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-header}}~~
−	~~<!-- ---------------------------- -->~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|Introduction and Acknowledgements}}~~
−	~~{{documentation/{{documentation/version}}/module-introduction-start\|{{documentation/modulename}}}}~~
−	~~{{documentation/{{documentation/version}}/module-introduction-row}}~~
−	This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br>
−	~~Author: Csaba Pinter (PerkLab, Queen's University)<br>~~
−	~~Contact: Csaba Pinter, <email>pinter@cs.queensu.ca</email><br>~~
−	~~[http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerRT Back to SlicerRT home]~~
−
−	~~{{documentation/{{documentation/version}}/module-introduction-row}}~~
−	~~{{documentation/{{documentation/version}}/module-introduction-logo-gallery~~
−	~~\|{{collaborator\|logo\|cco}}\|{{collaborator\|longname\|cco}}~~
−	~~\|{{collaborator\|logo\|sparkit}}\|{{collaborator\|longname\|sparkit}}~~
−	~~\|{{collaborator\|logo\|ocairo}}\|{{collaborator\|longname\|ocairo}}~~
−	}}
−	~~{{documentation/{{documentation/version}}/module-introduction-end}}~~
−
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|Module Description}}~~
−	~~The {{documentation/modulename}} module manages all data that~~ has ~~been loaded from DICOM.~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|Use Cases}}~~
−
−	~~{\| class="wikitable"~~
−	\|
−
−	* Load DICOM data and need to see in the same hierarchy
−	* Add external data to subject hierarchy
−	* Transform whole study (coming soon)
−	* Export DICOM data (coming soon)
−	* Create contour from labelmap or model
−	* Easily show study in views
−	* Edit DICOM tags (coming soon)
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|Tutorials}}~~
−	~~None specifically for Subject Hierarchy yet~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|How to}}~~
−
−	~~; Create contour from scratch~~
−	~~: In Contours module select 'Create new Contour' in the contour selector drop-down to create a new contour~~
−	~~: In Subject Hierarchy module drag&drop new contour from 'Potential subject hierarchy nodes' list to under a contour set in the tree~~
−	~~: The default representation is an empty Ribbon model. It can be converted to Indexed labelmap in the Contours module and then the labelmap '''can be edited in the Editor module'''~~
−
−	~~; Create contour from labelmap volume or model~~
−	: In Subject Hierarchy module drag&drop the existing representation (labelmap or model) from 'Potential subject hierarchy nodes' list to under a contour set in the tree. This way an encapsulating Contour node gets created and associated to the corresponding color table
−
−	~~; Create new generic Subject hierarchy node from scratch~~
−	: Right-click on an existing node and select 'Create generic child node'. The level of the child node will be one under the parent node if available (e.g. 'Patient' -> 'Study', 'Subseries' -> 'Subseries').
−
−	~~; Create new Contour set from scratch~~
−	~~: Right-click on an existing Study node and select 'Create child contour set'. This menu item is only available for Study level nodes~~
−
−	~~; Create new Patient/Subject from scratch~~
−	~~: Right-click on the top-level item 'Scene' and select 'Create new patient' or subject~~
−
−	~~; Rename Subject hierarchy node~~
−	~~: Right-click on the node and select 'Rename'~~
−
−	~~; Deform contour set using a transform (registration result)~~
−	~~: Bulk resampling not implemented yet :(~~
−
−	\| [[~~File:SlicerRT_0.11_PatientHierarchy_ProstateEntLoaded.png\|thumb\|408px\| Patient hierarchy module GUI]]~~
−	\|}
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation~~/{{documentation/version}}/~~module-section\|Panels and their use}}~~
−	~~; Subject hierarchy tree (top)~~
−	~~: Contains all the objects in the Subject hierarchy in a tree representation.~~
−	: The only items that exist in the tree before importing any data are the default contour set and its corresponding color table, which facilitates Contour node creation without having any DICOM data imported
−
−	~~; MRML Node Inspector (closed drop-down panel under the tree)~~
−	~~: Displays the attributes of the currently selected Subject hierarchy node. Can be edited by double-clicking on an attribute name or value~~
−
−	~~; Potential subject hierarchy nodes list~~
−	~~: List of nodes that are currently outside the subject hierarchy, but can be added. Nodes are listed in this list if there is at least one plugin that can do the adding of that node.~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|Similar~~ Modules}}
−	~~N/A~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}~~/~~module-section~~\|~~References}}~~
−	* Manual editing of contours can be done in the [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/Contours Contours module]
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-section\|Information for Developers}}~~
−	* [http://www.slicer.org/slicerWiki/images/7/7c/SlicerRt_PatientHierarchy_Overview.pptx Technical overview of the Patient Hierarchy mechanism]
−	* [https://www.assembla.~~com/spaces/slicerrt/wiki/SlicerRt_naming_conventions Glossary of all the used terms in SlicerRT]~~
−
−	~~<!-- ---------------------------- -->~~
−	~~{{documentation/{{documentation/version}}/module-footer}}~~
−	~~<!-- ---------------------------- -->~~

@@ Line 33: / Line 33: @@
 * Load DICOM data and need to see in the same hierarchy
-* Add external data to patient hierarchy
+* Add external data to subject hierarchy
 * Transform whole study (coming soon)
 * Export DICOM data (coming soon)
@@ Line 42: / Line 42: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
-None specifically for Patient Hierarchy yet
+None specifically for Subject Hierarchy yet
 <!-- ---------------------------- -->
@@ Line 49: / Line 49: @@
 ; Create contour from scratch
 : In Contours module select 'Create new Contour' in the contour selector drop-down to create a new contour
-: In Patient Hierarchy module drag&drop new contour from 'Potential patient hierarchy nodes' list to under a structure set in the tree
+: In Subject Hierarchy module drag&drop new contour from 'Potential subject hierarchy nodes' list to under a contour set in the tree
 : The default representation is an empty Ribbon model. It can be converted to Indexed labelmap in the Contours module and then the labelmap '''can be edited in the Editor module'''
 ; Create contour from labelmap volume or model
-: In Patient Hierarchy module drag&drop the existing representation (labelmap or model) from 'Potential patient hierarchy nodes' list to under a structure set in the tree. This way an encapsulating Contour node gets created and associated to the corresponding color table
+: In Subject Hierarchy module drag&drop the existing representation (labelmap or model) from 'Potential subject hierarchy nodes' list to under a contour set in the tree. This way an encapsulating Contour node gets created and associated to the corresponding color table
-; Create new generic Patient hierarchy node from scratch
+; Create new generic Subject hierarchy node from scratch
 : Right-click on an existing node and select 'Create generic child node'. The level of the child node will be one under the parent node if available (e.g. 'Patient' -> 'Study', 'Subseries' -> 'Subseries').
-; Create new Structure set from scratch
+; Create new Contour set from scratch
-: Right-click on an existing Study node and select 'Create child structure set'. This menu item is only available for Study level nodes
+: Right-click on an existing Study node and select 'Create child contour set'. This menu item is only available for Study level nodes
-; Create new Patient from scratch
+; Create new Patient/Subject from scratch
-: Right-click on the top-level item 'Scene' and select 'Create new patient'
+: Right-click on the top-level item 'Scene' and select 'Create new patient' or subject
-; Rename Patient hierarchy node
+; Rename Subject hierarchy node
 : Right-click on the node and select 'Rename'
-; Deform structure set using a transform (registration result)
+; Deform contour set using a transform (registration result)
 : Bulk resampling not implemented yet :(
@@ Line 75: / Line 75: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels and their use}}
-; Patient hierarchy tree (top)
+; Subject hierarchy tree (top)
-: Contains all the objects in the Patient hierarchy in a tree representation.
+: Contains all the objects in the Subject hierarchy in a tree representation.
-: The only items that exist in the tree before importing any data are the default structure set and its corresponding color table, which facilitates Contour node creation without having any DICOM data imported
+: The only items that exist in the tree before importing any data are the default contour set and its corresponding color table, which facilitates Contour node creation without having any DICOM data imported
 ; MRML Node Inspector (closed drop-down panel under the tree)
-: Displays the attributes of the currently selected Patient hierarchy node. Can be edited by double-clicking on an attribute name or value
+: Displays the attributes of the currently selected Subject hierarchy node. Can be edited by double-clicking on an attribute name or value
-; Potential patient hierarchy nodes list
+; Potential subject hierarchy nodes list
-: List of nodes that are currently outside the patient hierarchy, but can be added. Nodes are listed in this list if there is at least one plugin that can do the adding of that node.
+: List of nodes that are currently outside the subject hierarchy, but can be added. Nodes are listed in this list if there is at least one plugin that can do the adding of that node.
 <!-- ---------------------------- -->

@@ Line 50: / Line 50: @@
 : In Contours module select 'Create new Contour' in the contour selector drop-down to create a new contour
 : In Patient Hierarchy module drag&drop new contour from 'Potential patient hierarchy nodes' list to under a structure set in the tree
-: The default representation is an empty Ribbon model. It can be converted to Indexed labelmap in the Contours module and then the labelmap can be edited in the Editor module
+: The default representation is an empty Ribbon model. It can be converted to Indexed labelmap in the Contours module and then the labelmap '''can be edited in the Editor module'''
 ; Create contour from labelmap volume or model

@@ Line 70: / Line 70: @@
 : Bulk resampling not implemented yet :(
-| [[File:SlicerRT_0.11_PatientHierarchy_ProstateEntLoaded.png|thumb|406px| Patient hierarchy module GUI]]
+| [[File:SlicerRT_0.11_PatientHierarchy_ProstateEntLoaded.png|thumb|408px| Patient hierarchy module GUI]]
 |}

@@ Line 11: / Line 11: @@
 Author: Csaba Pinter (PerkLab, Queen's University)<br>
 Contact: Csaba Pinter, <email>pinter@cs.queensu.ca</email><br>
-[http://www.slicer.org/slicerWiki/index.php/Documentation/4.2/Extensions/SlicerRT Back to SlicerRT home]
+[http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerRT Back to SlicerRT home]
 {{documentation/{{documentation/version}}/module-introduction-row}}