Vboen at 15:31, 31 October 2013

2013-10-31T15:31:19Z

Vboen: Created page with '{{documentation/versioncheck}} NOTOC ===NonGrowing=== NonGrowing {| |User Interface |[[Image:BaselineCB…'

2013-09-23T21:30:08Z

Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> __NOTOC__ ===NonGrowing=== NonGrowing {| |thumb|280px|User Interface |[[Image:BaselineCB…'

New page

<noinclude>{{documentation/versioncheck}}</noinclude>
__NOTOC__

===NonGrowing===
NonGrowing

{|
|[[Image:NonGrowingInterface.png|thumb|280px|User Interface]]
|[[Image:BaselineCBCTCMFreg.png|thumb|280px|Baseline CBCT Scan - Input Scan]]
|[[Image:FollowupCBCTCMFreg.png|thumb|280px|Follow up CBCT Scan - Input Scan]]
|[[Image:BaselineSegmentationMaskCMFreg.png|thumb|280px|Baseline Segmentation Mask - Input Seg]]
|[[Image:FollowupSegmentationMaskCMFreg.png|thumb|280px|Followup Segmentation Mask - Input Seg]]
|[[Image:BaselineFollowupSCANCMFreg2.png|thumb|280px|Baseline and Followup CBCT Scans - Baseline Input Scan + Followup Input Scan]]
|[[Image:BaselineFollowupSCANRegisteredCMFreg.png|thumb|280px|Baseline and Followup CBCT Scans Registered - Baseline Input Scan + Output Scan]]
|}

== General Information ==

===Module Type & Category===

Type: Extension

Category: CBCT Scan Registration

===Authors, Collaborators & Contact===

Author: Vinicius Boen

Contributors: Francois Budin (NIRAL, University of North Carolina), Martin Styner (NIRAL, University Of North Carolina), Beatriz Paniagua (NIRAL, University Of North Carolina), Lucia Cevidanes (University of Michigan - School of Dentistry)

Contact: vboen@umich.edu

===Module Description===
* '''''Input Parameters''''':
** '''Baseline Scan (fixed)''' [-f --fixedVolume] : The fixed scan image for registration.
** '''Follow up Scan (moving)''' [-m --movingVolume] : The moving scan image for registration.
** '''Baseline Segmentation (fixed)''' [--fixedBinaryVolume] : The fixed one label segmentation image for registration used to specify the region of interest.
** '''Follow up Segmentation (moving)''' [--movingBinaryVolume] : The moving one label segmentation image for registration used to specify the region of interest.

* '''''Output Registration Matrix''''':
** '''Registration Matrix''' [-t --transformPath] : File name for the rigid component of the estimated registration matrix. Can be used to rigidly register the moving image to the fixed image.

* '''''Apply Registration Matrix''''':
** '''Input Segmentatiton to be Registered''' [--segmentation] : Input segmentation image to be modified with the registration matrix.
** '''Output Registered Scan''' [--segmentationOut] : Output segmentation image. This segmentaiton image is the 'Input Segmentation to be Registered' with the registration matrix already applied.
** '''Output Registered Scan''' [--outputVolume] : Output image for registration. This image is the Follow up Scan with the registration matrix already applied.

[[Image:NonGrowingInterface.png|thumb|280px|User Interface]]

@@ Line 12: / Line 12: @@
 |[[Image:FollowupSegmentationMaskCMFreg.png|thumb|280px|Followup Segmentation Mask - Input Seg]]
 |[[Image:BaselineFollowupSCANCMFreg2.png|thumb|280px|Baseline and Followup CBCT Scans - Baseline Input Scan + Followup Input Scan]]
-|[[Image:BaselineFollowupSCANRegisteredCMFreg.png|thumb|280px|Baseline and Followup CBCT Scans Registered - Baseline Input Scan + Output Scan]]
+|[[Image:BaselineFollowupSCANRegisteredCMFreg2.png|thumb|280px|Baseline and Followup CBCT Scans Registered - Baseline Input Scan + Output Scan]]
 |}

Documentation/Nightly/Modules/NonGrowing - Revision history

Vboen at 15:31, 31 October 2013

Vboen: Created page with '{{documentation/versioncheck}} __NOTOC__ ===NonGrowing=== NonGrowing {| |User Interface |[[Image:BaselineCB…'

Vboen: Created page with '{{documentation/versioncheck}} NOTOC ===NonGrowing=== NonGrowing {| |User Interface |[[Image:BaselineCB…'