Documentation/Nightly/Modules/Models - Revision history

Lasso: moved to readthedocs

2022-04-03T18:25:17Z

moved to readthedocs

2019-11-27T02:19:34Z

Text replacement - "\[http:\/\/wiki\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2"

2016-06-28T20:00:05Z

2016-05-11T20:54:42Z

2016-05-11T20:53:48Z

Fixed typos and updated tutorial link

2013-11-14T23:14:14Z

2013-11-14T22:56:00Z

2013-11-14T22:47:44Z

2013-11-05T22:00:22Z

Missing model hierarchies in a loaded scene

2013-11-05T21:47:54Z

Help! My model hierarchies aren't showing up!

@@ Line 1: / Line 1: @@
 <noinclude>{{documentation/versioncheck}}</noinclude>
-<!-- ---------------------------- -->
+{{documentation/banner
-{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
+| text  = [https://slicer.readthedocs.io/en/latest/user_guide/modules/models.html This page has been moved to read-the-docs.]
-{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}} }}
+| background-color = 8FBC8F }}

@@ Line 37: / Line 37: @@
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
-* Tutorial about [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.5/Training#Slicer4_Data_Loading_and_3D_Visualization loading and viewing data].
+* Tutorial about [[Documentation/4.5/Training#Slicer4_Data_Loading_and_3D_Visualization|loading and viewing data]].
 <!-- ---------------------------- -->

@@ Line 26: / Line 26: @@
 {{documentation/{{documentation/version}}/module-section|Use Cases}}
 {|
-|-
+[[File:Slicer43-Models-KneeAtlas.jpeg|right|300px|Knee Atlas Models]]
-|Examples:
+* Manipulating the appearance of the surface models that are part of anatomical atlases, for example one found in the [http://www.slicer.org/pages/Special:PubDB_View?dspaceid=1265 SPL/PNL Brain Atlas] or the [http://www.slicer.org/publications/item/view/1953 SPL Knee Atlas].
 **turning visibility on or off for individual structure (e.g. turn the skin off)
 **change the color, opacity, and "shininess" of a structure (e.g. make the skin appear semitransparent)
 **drag and drop interface to organize models into hierarchical groups (e.g. lateral ventricles, third and fourth ventricles of the brain under the name ventricles of the brain).
 ***these groups can be turned on and off by manipulating the parent.
-* Use Case 2: Adjusting the appearance of surface models generated from the ModelMaker module
+* Adjusting the appearance of surface models generated from the ModelMaker module
 |}
 <!-- ---------------------------- -->

@@ Line 115: / Line 115: @@
 ===Missing model hierarchies in a loaded scene===
-There was a change made in how the Models GUI displays model hierarchies, moving to respecting a hide flag on the nodes. If you have an older scene (written before 2013) loaded into a newer Slicer and the Models GUI isn't showing the model hierarchy that you know is in the scene, you can use this code snippet in the Python Interactor to update the flags. You may needto save the scene and reopen it in order for the GUI to show the updated view.
+There was a change made in how the Models GUI displays model hierarchies, moving to respecting a hide flag on the nodes. If you have an older scene (written before 2013) loaded into a newer Slicer and the Models GUI isn't showing the model hierarchy that you know is in the scene, you can use this code snippet in the Python Interactor to update the flags. You may need to save the scene and reopen it in order for the GUI to show the updated view.
   numNodes = slicer.mrmlScene.GetNumberOfNodesByClass("vtkMRMLModelHierarchyNode")

@@ Line 31: / Line 31: @@
 **turning visibility on or off for individual structure (e.g. turn the skin off)
 **change the color, opacity, and "shininess" of a structure (e.g. make the skin appear semitransparent)
-**drag and drop interface to organize models into hierarchical groups (e.g. lateral ventricles, third and fourth ventricles of the brain under the name ventricles of the brain). These groups can be turned on and off by manipulating the parent.
+**drag and drop interface to organize models into hierarchical groups (e.g. lateral ventricles, third and fourth ventricles of the brain under the name ventricles of the brain).
-* Use Case 2: Adjusting the appearance of surface models generated from the Model Maker module
+***these groups can be turned on and off by manipulating the parent.
 | [[File:Slicer43-Models-KneeAtlas.jpeg|left|300px|Knee Atlas Models]]
 |}
@@ Line 38: / Line 39: @@
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
-* Tutorial about [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Training loading and viewing data].
+* Tutorial about [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.5/Training#Slicer4_Data_Loading_and_3D_Visualization loading and viewing data].
 <!-- ---------------------------- -->

@@ Line 46: / Line 46: @@
 {|
 |-
-| [[File:2013_04_23-ModelsModule.png|thumb|200px]]
+| [[File:Slicer43-Models-GUI.jpeg|thumb|200px]]
 | [[File:Slicer43-Models-SceneHierarchy.jpeg|thumb|200px|Model Hierarchy]]
 | [[File:Slicer43-Models-Information.jpeg|thumb|200px|Model Information]]
@@ Line 55: / Line 55: @@
 {|
 |valign="top"|{{documentation/{{documentation/version}}/module-parametersdescription}}
-|valign="top"|[[File:2013_04_23-ModelsModule.png|thumb|550px|[[Documentation/{{documentation/version}}/Modules/Models|Models]] module GUI]]
+|valign="top"|[[File:Slicer43-Models-GUI.jpeg|thumb|550px|[[Documentation/{{documentation/version}}/Modules/Models|Models]] module GUI]]
 |}

@@ Line 47: / Line 47: @@
 |-
 | [[File:2013_04_23-ModelsModule.png|thumb|200px]]
-| [[File:Slicer4-Models-SceneHierarchy.jpeg|thumb|200px|Model Hierarchy]]
+| [[File:Slicer43-Models-SceneHierarchy.jpeg|thumb|200px|Model Hierarchy]]
-| [[File:Slicer4-Models-Information.jpeg|thumb|200px|Model Information]]
+| [[File:Slicer43-Models-Information.jpeg|thumb|200px|Model Information]]
 | [[File:QSlicerModelsModuleWidget-Display.png|thumb|200px|Model Display Properties]]
 | [[File:Slicer4-Models-Clipping.jpeg|thumb|200px|Model Clipping Properties]]

@@ Line 112: / Line 112: @@
 Then in Slicer you can load the model, open the Models module, open Scalars, enable "Visible", select "Result" as active scalar, select a color table.
-===Help! My model hierarchies aren't showing up!===
+===Missing model hierarchies in a loaded scene===
 There was a change made in how the Models GUI displays model hierarchies, moving to respecting a hide flag on the nodes. If you have an older scene loaded into a newer Slicer and the Models GUI isn't showing the model hierarchy that you know is in the scene, you can use this code snippet in the Python Interactor to update the flags. You may needto save the scene and reopen it in order for the GUI to show the updated view.