Documentation/Nightly/Modules/ModelToLabelMap - Revision history

Grundlett: Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2"

2019-11-27T02:29:38Z

Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2"

Nicole at 19:01, 15 November 2013

2013-11-15T19:01:43Z

Nicole at 22:12, 13 November 2013

2013-11-13T22:12:07Z

Nicole at 21:07, 18 July 2013

2013-07-18T21:07:11Z

Nicole at 20:51, 18 July 2013

2013-07-18T20:51:47Z

UpdateBot: Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

2013-06-14T07:52:12Z

Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

Pieper at 13:09, 21 January 2013

2013-01-21T13:09:32Z

JChris.FillionR: 4.1 -> Nightly

2012-08-22T16:51:17Z

4.1 -> Nightly

New page

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
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{{documentation/{{documentation/version}}/module-acknowledgements}}<br>
Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
Author: Nicole Aucoin, SPL<br>
Contact: Nicole Aucoin, <email>nicole@bwh.harvard.edu</email><br>
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:Logo-splnew.jpg|Surgical Planning Laboratory
|Image:NAMIC 380x463.jpg|NA-MIC
|Image:NAC-logo.png|NAC
}}
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{{documentation/{{documentation/version}}/module-section|Module Description}}
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{{documentation/{{documentation/version}}/module-section|Use Cases}}

<gallery>
Image:Slicer4-PolyDataToLabelMap-GUI.jpeg|GUI panel
Image:Slicer4-PolyDataToLabelMap-Output.jpeg|Surface model overlaid on reference image with generated label map shown in purple on 2d slices
</gallery>

* This module may be thought of as the inverse of Marching Cubes.
* It is useful if you only have a surface model and wish to do volumetric processing on an image


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{{documentation/{{documentation/version}}/module-section|Panels}}
{{documentation/{{documentation/version}}/module-parametersdescription}}

{|
|[[Image:Slicer4-PolyDataToLabelMap-GUI.jpeg|thumb|right|280px|Input/Output panels. This module takes three input: '''Input Volume''' is the reference volume. '''Model''' is the surface model from whose interior is to be labeled as foreground, and '''Output Volume''' is the output label map. Output Volume has the same image parameters (size, resolution, orientation, etc) as Input Volume.]]
|[[Image:PolyDataToLabelMap-ParametersPanels-3-6.png|thumb|right|280px|Parameters panels. Since surface can be very sparsely triangulated, this module first resamples the input surface model in an appropriate resolution. The parameter '''Sample Distance''' controls how fine the surface is sampled. The ballpark value for this parameter is the smallest size of voxels (in mm) in Input Volume.]]
|}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}
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@@ Line 51: / Line 51: @@
 {{documentation/{{documentation/version}}/module-section|Similar Modules}}
-*[http://www.slicer.org/slicerWiki/index.php/Documentation/{{documentation/version}}/Modules/ModelMaker Model Maker]
+*[[Documentation/{{documentation/version}}/Modules/ModelMaker|Model Maker]]
 <!-- ---------------------------- -->

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 {{documentation/{{documentation/version}}/module-acknowledgements}}<br>
 Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
 Contact: Nicole Aucoin, <email>nicole@bwh.harvard.edu</email><br>
 {{documentation/{{documentation/version}}/module-introduction-row}}
@@ Line 46: / Line 45: @@
 {|
 |[[Image:Slicer4-ModelToLabelMap-GUI.jpeg|thumb|right|280px|Input/Output panels. This module takes as input: '''Input Volume''' as the reference volume. '''Model''' is the surface model from whose interior is to be labeled. The output of this module is '''Output Volume''', the output label map. Output Volume has the same image parameters (size, resolution, orientation, etc) as Input Volume. The model needs to be closed or else the output volume will be flooded.]]
-|[[Image:ModelToLabelMap-ParametersPanel-4-3.png|thumb|right|280px|Parameters panels. Since the surface can be very sparsely triangulated, this module first resamples the input surface model in an appropriate resolution. The parameter '''Sample Distance''' controls how fine the surface is sampled. The ballpark value for this parameter is the smallest size of voxels (in mm) in Input Volume. The parameter '''Label Value''' lets the user pick which value will be written into the output label map.]]
+|[[Image:ModelToLabelMap-ParametersPanel-4-3.png|thumb|right|280px|Parameters panels. Since the surface can be very sparsely triangulated, this module first resamples the input surface model in an appropriate resolution. The parameter '''Sample Distance''' controls how finely the surface is sampled. The ballpark value for this parameter is the smallest size of voxels (in mm) in Input Volume. The parameter '''Label Value''' lets the user pick which value will be written into the output label map.]]
 |}

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@@ Line 29: / Line 29: @@
 <gallery>
-Image:Slicer4-PolyDataToLabelMap-GUI.jpeg|GUI panel
+Image:Slicer4-ModelToLabelMap-GUI.jpeg|GUI panel
 Image:Slicer4-PolyDataToLabelMap-Output.jpeg|Surface model overlaid on reference image with generated label map shown in purple on 2d slices
 </gallery>
@@ Line 45: / Line 45: @@
 {|
-|[[Image:Slicer4-PolyDataToLabelMap-GUI.jpeg|thumb|right|280px|Input/Output panels. This module takes three input: '''Input Volume''' is the reference volume. '''Model''' is the surface model from whose interior is to be labeled as foreground, and '''Output Volume''' is the output label map. Output Volume has the same image parameters (size, resolution, orientation, etc) as Input Volume.]]
+|[[Image:Slicer4-ModelToLabelMap-GUI.jpeg|thumb|right|280px|Input/Output panels. This module takes as input: '''Input Volume''' as the reference volume. '''Model''' is the surface model from whose interior is to be labeled. The output of this module is '''Output Volume''', the output label map. Output Volume has the same image parameters (size, resolution, orientation, etc) as Input Volume. The model needs to be closed or else the output volume will be flooded.]]
-|[[Image:PolyDataToLabelMap-ParametersPanels-3-6.png|thumb|right|280px|Parameters panels. Since surface can be very sparsely triangulated, this module first resamples the input surface model in an appropriate resolution. The parameter '''Sample Distance''' controls how fine the surface is sampled. The ballpark value for this parameter is the smallest size of voxels (in mm) in Input Volume.]]
+|[[Image:ModelToLabelMap-ParametersPanel-4-3.png|thumb|right|280px|Parameters panels. Since the surface can be very sparsely triangulated, this module first resamples the input surface model in an appropriate resolution. The parameter '''Sample Distance''' controls how fine the surface is sampled. The ballpark value for this parameter is the smallest size of voxels (in mm) in Input Volume. The parameter '''Label Value''' lets the user pick which value will be written into the output label map.]]
 |}

@@ Line 32: / Line 32: @@
 </gallery>
-* This module may be thought of as the inverse of Marching Cubes.
+* This module may be thought of as the inverse of Marching Cubes (Model Maker module), except that only the surface points are set in the label map, not the interior.
 * It is useful if you only have a surface model and wish to do volumetric processing on an image